Detailed information NTG0478328

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: J1N58_RS00335
• Genome accession: NZ_CP071697
• Coordinates: 63893..64894 (+)
• Length: 333 a.a.
• NCBI ID: WP_024377694.1
• Uniprot ID: -
• Organism: Streptococcus suis strain 1112S
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 58893..69894

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J1N58_RS00320 (J1N58_00320)	-	59616..60389 (+)	774	WP_207560401.1	hypothetical protein	-
J1N58_RS00325 (J1N58_00325)	-	60392..62104 (+)	1713	WP_099806978.1	ABC transporter ATP-binding protein	-
J1N58_RS00330 (J1N58_00330)	-	62431..63699 (+)	1269	WP_099806979.1	MerR family transcriptional regulator	-
J1N58_RS00335 (J1N58_00335)	ruvB	63893..64894 (+)	1002	WP_024377694.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
J1N58_RS00340 (J1N58_00340)	-	64962..65597 (+)	636	WP_024418825.1	HAD-IA family hydrolase	-
J1N58_RS00345 (J1N58_00345)	tnpA	65778..66272 (+)	495	Protein_50	IS200/IS605 family transposase	-
J1N58_RS00350 (J1N58_00350)	comR	66482..67381 (+)	900	WP_024377696.1	helix-turn-helix domain-containing protein	Regulator
J1N58_RS00355 (J1N58_00355)	-	67599..68819 (+)	1221	WP_207560402.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 37627.15 Da
• Isoelectric Point: 4.4673

>NTDB_id=478328 J1N58_RS00335 WP_024377694.1 63893..64894(+) (ruvB) [Streptococcus suis strain 1112S]
MTNRILDMEQMQDEEYVERTLRPQKLNEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN
IKQTSGPVIEKAGDLVALLNDLEPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAGEASRSVHLELPPFTLIGATT
RAGMLSNPLRARFGITGHMEYYELADLTEIVERTADIFDMEITHEAAIELARRSRGTPRIANRLLKRVRDFAQIMGDGLI
DDTITDKALTMLDVDREGLDYVDQKILRTMIEMYGGGPVGLNTLSVNIAEERETVEDMYEPYLIQQGFLMRTRTGRVATA
KAYEHLGYPYTEK

Nucleotide

• Length: 1002 bp

>NTDB_id=478328 J1N58_RS00335 WP_024377694.1 63893..64894(+) (ruvB) [Streptococcus suis strain 1112S]
ATGACAAATCGAATTTTAGATATGGAACAAATGCAGGACGAGGAGTATGTTGAGCGTACCCTGCGTCCGCAGAAATTAAA
TGAATACATCGGTCAGGACAAGGTTAAGGACCAGCTGAAAATCTTTATCGAGGCAGCCAAGCTCCGTGATGAAGCCTTGG
ACCATACGCTTCTGTTTGGCCCTCCGGGTCTGGGGAAGACCACCATGGCCTTTGTCATTGCTAACGAATTGGGGGTCAAC
ATTAAGCAGACCAGCGGGCCTGTCATTGAAAAGGCAGGCGATTTGGTGGCCCTTCTCAACGACTTGGAGCCTGGCGACGT
CCTCTTTATCGATGAAATCCACCGTATGCCCATGGCGGTCGAGGAAATTCTCTACTCTGCTATGGAAGATTTCTACATCG
ACATTATGATTGGGGCTGGGGAGGCCAGCCGGTCCGTGCATTTGGAGTTGCCACCTTTTACCCTGATTGGAGCAACCACT
CGTGCGGGTATGCTGTCCAATCCTCTGAGGGCCCGTTTTGGGATTACCGGTCACATGGAATACTACGAACTGGCTGATTT
GACGGAGATTGTCGAGCGGACGGCGGATATCTTTGATATGGAGATTACTCATGAAGCCGCTATCGAGCTGGCTCGTCGGT
CTCGTGGAACTCCCCGTATCGCCAACCGCCTGCTCAAGCGGGTGCGGGATTTTGCACAGATTATGGGCGACGGTCTGATT
GATGACACCATTACGGATAAGGCCTTGACTATGCTGGATGTGGACCGCGAGGGGCTGGACTACGTGGACCAGAAGATTCT
CCGCACCATGATTGAGATGTACGGTGGCGGTCCTGTTGGTCTTAACACCCTGTCGGTCAATATTGCCGAGGAGCGTGAAA
CGGTGGAAGATATGTACGAGCCTTACCTGATTCAGCAGGGCTTCCTTATGCGGACACGGACGGGGCGGGTTGCAACAGCC
AAGGCCTACGAGCACTTGGGTTATCCCTATACGGAAAAATAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

• RuvB AAA lid domain (AAA_lid_4) (182-255)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	90.332	99.399	0.898
ruvB	Streptococcus pneumoniae R6	90.03	99.399	0.895
ruvB	Streptococcus pneumoniae D39	90.03	99.399	0.895
ruvB	Bacillus subtilis subsp. subtilis str. 168	58.589	97.898	0.574
ruvB	Helicobacter pylori 26695	51.064	98.799	0.505
ruvB	Synechocystis sp. PCC 6803	50.479	93.994	0.474