Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H9L15_RS05995 Genome accession   NZ_CP060780
Coordinates   1128355..1128849 (-) Length   164 a.a.
NCBI ID   WP_187715514.1    Uniprot ID   -
Organism   Sphingomonas daechungensis strain KACC 18115     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1123355..1133849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9L15_RS17200 - 1123520..1123768 (-) 249 Protein_1308 TonB-dependent receptor plug domain-containing protein -
  H9L15_RS17205 - 1123687..1124001 (-) 315 WP_223276554.1 hypothetical protein -
  H9L15_RS05965 (H9L15_05965) - 1124120..1124794 (+) 675 WP_223276555.1 TetR/AcrR family transcriptional regulator -
  H9L15_RS17210 - 1124791..1125090 (-) 300 WP_223276556.1 hypothetical protein -
  H9L15_RS17215 - 1125069..1125779 (-) 711 WP_223276557.1 hypothetical protein -
  H9L15_RS05975 (H9L15_05975) - 1125938..1126705 (-) 768 WP_223276558.1 tryptophan 2,3-dioxygenase -
  H9L15_RS05980 (H9L15_05980) - 1126743..1127174 (-) 432 WP_187715511.1 outer membrane protein assembly factor BamE -
  H9L15_RS05985 (H9L15_05985) - 1127329..1127823 (+) 495 WP_187715512.1 ubiquinol-cytochrome C chaperone family protein -
  H9L15_RS05990 (H9L15_05990) - 1127840..1128358 (+) 519 WP_187715513.1 DUF177 domain-containing protein -
  H9L15_RS05995 (H9L15_05995) ssb 1128355..1128849 (-) 495 WP_187715514.1 single-stranded DNA-binding protein Machinery gene
  H9L15_RS20230 - 1128879..1129445 (-) 567 WP_398286764.1 nucleoside recognition domain-containing protein -
  H9L15_RS06000 (H9L15_06000) - 1129442..1130725 (-) 1284 WP_398286766.1 ferrous iron transporter B -
  H9L15_RS06005 (H9L15_06005) - 1130733..1130999 (-) 267 WP_187715515.1 FeoA family protein -
  H9L15_RS06010 (H9L15_06010) - 1131066..1131713 (-) 648 WP_187715516.1 COQ9 family protein -
  H9L15_RS06015 (H9L15_06015) - 1131720..1132613 (-) 894 WP_187715517.1 DMT family transporter -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17708.36 Da        Isoelectric Point: 5.0179

>NTDB_id=478301 H9L15_RS05995 WP_187715514.1 1128355..1128849(-) (ssb) [Sphingomonas daechungensis strain KACC 18115]
MAGVNKVILVGNLGADPEARSLNNGGEVVNLRVATSENWKDRDGNRQERTEWHQVVIFNENLGRVAKSYLKKGSKVYLEG
QLQTRKWTDQSGNDKYTTEIVLQRFRGELVLLDSRGEGGGSGGAFGGGGYGDDFGGGSSGGGSQRQQRPQPAAFDSDLDD
DVPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=478301 H9L15_RS05995 WP_187715514.1 1128355..1128849(-) (ssb) [Sphingomonas daechungensis strain KACC 18115]
ATGGCGGGCGTGAACAAGGTGATCCTGGTCGGCAATCTCGGCGCGGATCCGGAAGCCCGTTCATTGAACAATGGCGGCGA
GGTCGTGAACCTTCGCGTTGCCACTTCCGAGAACTGGAAGGACCGCGACGGCAACCGTCAGGAGCGGACCGAATGGCACC
AGGTCGTCATCTTCAACGAGAACCTCGGCCGCGTCGCGAAGAGCTACTTGAAGAAGGGCTCGAAGGTCTATCTCGAAGGC
CAGCTCCAGACCCGCAAGTGGACCGACCAGTCCGGCAACGACAAGTATACGACCGAGATTGTGCTTCAGCGTTTCCGCGG
TGAGCTGGTCCTGCTCGACAGCCGTGGTGAAGGCGGCGGATCGGGCGGCGCATTCGGCGGCGGCGGTTACGGCGATGACT
TCGGTGGCGGGAGCAGTGGCGGCGGCTCACAGCGCCAGCAGCGTCCGCAGCCGGCCGCGTTCGACAGCGACCTAGACGAC
GACGTTCCTTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.809

100

0.537
  ssb Vibrio cholerae strain A1552

45.198

100

0.488
  ssb Neisseria gonorrhoeae MS11

41.341

100

0.451
  ssb Neisseria meningitidis MC58

40.782

100

0.445