Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H9L18_RS00705 Genome accession   NZ_CP060720
Coordinates   147298..147819 (-) Length   173 a.a.
NCBI ID   WP_126795839.1    Uniprot ID   A0A430ASS1
Organism   Vagococcus carniphilus strain ATCC BAA-640     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 142298..152819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9L18_RS00680 (H9L18_00680) - 142678..143550 (-) 873 WP_126795847.1 DegV family protein -
  H9L18_RS00685 (H9L18_00685) - 143632..144924 (-) 1293 WP_126795845.1 adenylosuccinate synthase -
  H9L18_RS00690 (H9L18_00690) dnaB 145042..146403 (-) 1362 WP_126795843.1 replicative DNA helicase -
  H9L18_RS00695 (H9L18_00695) rplI 146432..146884 (-) 453 WP_126795841.1 50S ribosomal protein L9 -
  H9L18_RS00700 (H9L18_00700) rpsR 147032..147274 (-) 243 WP_086340744.1 30S ribosomal protein S18 -
  H9L18_RS00705 (H9L18_00705) ssb 147298..147819 (-) 522 WP_126795839.1 single-stranded DNA-binding protein Machinery gene
  H9L18_RS00710 (H9L18_00710) rpsF 147862..148161 (-) 300 WP_126795837.1 30S ribosomal protein S6 -
  H9L18_RS00715 (H9L18_00715) gyrA 148424..150928 (-) 2505 WP_126795835.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19319.06 Da        Isoelectric Point: 4.6109

>NTDB_id=478026 H9L18_RS00705 WP_126795839.1 147298..147819(-) (ssb) [Vagococcus carniphilus strain ATCC BAA-640]
MINNVVLVGRLTRDPELRFTSNGSAVATFNLAINRNFTNQSGEREADFVNCVIWRKPAETLANYAKKGTLLGVVGRIQTR
NYENQQGQKVYVTEVVCDNFQLLESRSVSEQRQQTGGFGNQDSGNNFNNFSQNQNNQSFGQSSSKNEMPSFDRDADPFGS
SSQIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=478026 H9L18_RS00705 WP_126795839.1 147298..147819(-) (ssb) [Vagococcus carniphilus strain ATCC BAA-640]
ATGATTAATAACGTTGTGCTAGTAGGAAGACTTACTCGTGACCCAGAACTTAGATTTACATCTAATGGATCAGCTGTAGC
AACTTTTAATTTGGCTATTAACCGTAACTTCACTAATCAAAGTGGAGAACGCGAAGCTGATTTTGTTAATTGTGTTATTT
GGAGAAAACCGGCAGAAACATTAGCGAACTATGCAAAAAAAGGTACGCTATTGGGTGTTGTTGGACGTATCCAAACACGT
AATTATGAAAATCAACAAGGTCAAAAAGTTTATGTGACAGAAGTAGTATGTGATAACTTCCAATTATTAGAATCACGTAG
TGTATCTGAACAAAGACAACAAACAGGTGGCTTTGGTAATCAGGATTCAGGAAATAATTTCAATAATTTTTCTCAAAATC
AAAACAATCAATCATTTGGCCAATCTTCAAGTAAAAACGAAATGCCGAGTTTCGATCGTGATGCAGATCCATTTGGAAGC
TCATCACAAATAGATATTTCGGATGACGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A430ASS1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.795

100

0.618
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.542

100

0.595
  ssb Glaesserella parasuis strain SC1401

33.862

100

0.37
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

61.272

0.364