Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   J3Q13_RS00935 Genome accession   NZ_CP071583
Coordinates   190116..191621 (-) Length   501 a.a.
NCBI ID   WP_002857474.1    Uniprot ID   -
Organism   Campylobacter jejuni strain GB60     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 185116..196621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3Q13_RS00905 (J3Q13_00905) - 185318..186502 (-) 1185 WP_002854511.1 metallophosphoesterase -
  J3Q13_RS00910 (J3Q13_00910) - 186512..186721 (-) 210 WP_002857271.1 alkylphosphonate utilization protein -
  J3Q13_RS00915 (J3Q13_00915) - 186714..187433 (-) 720 WP_002857490.1 TerC family protein -
  J3Q13_RS00920 (J3Q13_00920) purN 187505..188071 (-) 567 WP_002857468.1 phosphoribosylglycinamide formyltransferase -
  J3Q13_RS00925 (J3Q13_00925) - 188062..189432 (-) 1371 WP_002857614.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  J3Q13_RS00930 (J3Q13_00930) - 189416..190114 (-) 699 WP_002857316.1 NYN domain-containing protein -
  J3Q13_RS00935 (J3Q13_00935) comM 190116..191621 (-) 1506 WP_002857474.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  J3Q13_RS00940 (J3Q13_00940) def 191618..192145 (-) 528 WP_002851936.1 peptide deformylase -
  J3Q13_RS00945 (J3Q13_00945) clpP 192181..192765 (-) 585 WP_002806309.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  J3Q13_RS00950 (J3Q13_00950) tig 192765..194099 (-) 1335 WP_032581807.1 trigger factor -
  J3Q13_RS00955 (J3Q13_00955) folE 194242..194814 (+) 573 WP_002851990.1 GTP cyclohydrolase I FolE -
  J3Q13_RS00960 (J3Q13_00960) fliI 194814..196199 (+) 1386 WP_002857326.1 flagellar protein export ATPase FliI -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 56457.53 Da        Isoelectric Point: 8.7353

>NTDB_id=478005 J3Q13_RS00935 WP_002857474.1 190116..191621(-) (comM) [Campylobacter jejuni strain GB60]
MKKLKCISFHEGLDIIEVESTFTRGLPNLSIVGLASTAIKESVERIKATLLSCDFAFPAKKITINLSPSGIPKKGSHFDL
AIALLILLQNEELDDFFVVGELGLDGSIKSTNELFSLLLFLSAKIKKAKIVVPKSIAQKASMIPNLEVYGLENLNEAIEF
FKEKNYENFRFSHNHPLFANPLQIENEIFLQNMDFKLDFKDIKGQEKAKRACMIAALGMHNILFEGSPGSGKSMCAKRLV
YIMPPQSLSEILMQNAYMSLDSKDCEFTKIRAFRHPHHTSTRASIFGGGTKNARIGEVALANGGVLFFDEFPHFNKQIIE
SLREPLEDYKIHISRVNSKITYETKFSFIAAQNPCPCGNLFSKNLSCVCSENEIKKYKNHISAPIMDRIDLYIAMDEISK
DDKVSISSKEMSEKILQAFIFGKKRGQKEFNGKLKDEDLSRFCVLEKDAKDTLDLAISRYNLSLRSLNKILKVSRSIADL
EQSLNINKTHILEALSFRARN

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=478005 J3Q13_RS00935 WP_002857474.1 190116..191621(-) (comM) [Campylobacter jejuni strain GB60]
ATGAAAAAACTAAAGTGCATAAGCTTTCATGAAGGCTTAGACATTATAGAGGTAGAATCCACTTTTACAAGAGGTTTGCC
AAATTTAAGCATAGTAGGGCTTGCAAGTACAGCGATTAAGGAAAGTGTCGAACGCATCAAAGCCACACTTTTAAGTTGTG
ATTTTGCTTTTCCTGCTAAAAAAATCACTATCAATCTTAGTCCTTCAGGCATCCCAAAAAAGGGATCGCATTTTGATTTG
GCTATCGCTTTATTAATCCTTTTGCAAAATGAAGAATTAGATGACTTTTTTGTAGTAGGAGAATTAGGACTTGATGGAAG
TATTAAAAGCACAAATGAGCTTTTTTCTTTGCTTTTGTTTCTCTCTGCTAAAATTAAAAAAGCTAAGATCGTTGTTCCAA
AAAGTATAGCACAAAAAGCTTCCATGATACCAAATTTAGAGGTTTATGGACTTGAAAATTTAAATGAAGCAATAGAGTTT
TTTAAAGAAAAAAATTATGAAAATTTTCGCTTTTCTCACAATCATCCTTTATTTGCAAACCCTTTACAAATAGAAAATGA
AATTTTTTTACAAAATATGGATTTTAAACTTGATTTTAAAGATATCAAAGGGCAGGAAAAAGCCAAAAGAGCTTGTATGA
TAGCTGCTTTAGGTATGCATAATATCTTATTTGAAGGAAGTCCAGGAAGTGGTAAAAGCATGTGTGCTAAACGCCTTGTT
TATATCATGCCCCCTCAAAGTTTAAGTGAAATTTTAATGCAAAATGCTTATATGTCTTTAGATTCAAAAGATTGTGAATT
TACTAAAATTCGTGCTTTTCGTCATCCTCATCATACTTCTACAAGAGCAAGTATTTTTGGCGGAGGAACAAAAAATGCCA
GAATTGGAGAAGTAGCACTTGCAAATGGTGGAGTATTGTTTTTTGATGAATTTCCACATTTTAACAAGCAAATCATAGAG
AGTTTAAGAGAACCTTTGGAGGATTATAAAATTCATATTTCAAGAGTAAATTCTAAAATCACTTATGAAACAAAATTTAG
CTTTATAGCTGCCCAAAATCCTTGTCCTTGTGGAAATTTATTCTCCAAAAATCTTTCTTGCGTTTGTAGCGAAAATGAGA
TTAAAAAGTATAAAAATCACATTTCAGCTCCTATTATGGATAGGATTGATCTTTATATAGCTATGGATGAGATCAGCAAG
GATGATAAAGTAAGTATAAGTTCTAAAGAAATGAGTGAAAAAATTTTACAAGCTTTTATTTTTGGTAAAAAACGGGGGCA
AAAAGAATTTAATGGGAAATTAAAAGATGAAGATTTGAGTCGTTTTTGTGTATTGGAAAAAGATGCTAAAGATACGCTAG
ATTTAGCAATTTCACGTTATAATCTTTCTTTGCGATCACTCAATAAAATTTTAAAAGTTTCAAGAAGTATAGCAGATTTA
GAACAAAGTCTTAATATTAACAAAACCCATATTTTAGAAGCTTTAAGCTTTAGAGCAAGGAATTAA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(18-134)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-400)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(407-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

47.295

99.601

0.471
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

36.273

99.601

0.361