Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H9L13_RS01785 Genome accession   NZ_CP060718
Coordinates   341351..341848 (+) Length   165 a.a.
NCBI ID   WP_187538504.1    Uniprot ID   A0A7G9SIM7
Organism   Sphingomonas lutea strain KCTC 23642     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 336351..346848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9L13_RS01755 (H9L13_01755) - 336457..337083 (-) 627 WP_187538494.1 heme-binding protein -
  H9L13_RS01760 (H9L13_01760) - 337183..338094 (+) 912 WP_235091063.1 DMT family transporter -
  H9L13_RS01765 (H9L13_01765) - 338100..338753 (+) 654 WP_187538496.1 COQ9 family protein -
  H9L13_RS01770 (H9L13_01770) - 338820..339050 (+) 231 WP_187538498.1 hypothetical protein -
  H9L13_RS01775 (H9L13_01775) - 339198..339476 (+) 279 WP_187538500.1 FeoA family protein -
  H9L13_RS01780 (H9L13_01780) - 339473..341320 (+) 1848 WP_187538502.1 ferrous iron transporter B -
  H9L13_RS01785 (H9L13_01785) ssb 341351..341848 (+) 498 WP_187538504.1 single-stranded DNA-binding protein Machinery gene
  H9L13_RS01790 (H9L13_01790) - 341864..342385 (-) 522 WP_187538506.1 DUF177 domain-containing protein -
  H9L13_RS01795 (H9L13_01795) - 342382..343020 (-) 639 WP_187538508.1 ubiquinol-cytochrome C chaperone family protein -
  H9L13_RS01800 (H9L13_01800) bamE 343019..343471 (+) 453 WP_187538510.1 outer membrane protein assembly factor BamE -
  H9L13_RS01805 (H9L13_01805) - 343514..344281 (+) 768 WP_235091067.1 tryptophan 2,3-dioxygenase family protein -
  H9L13_RS01810 (H9L13_01810) - 344278..345432 (+) 1155 WP_187538512.1 aminotransferase class V-fold PLP-dependent enzyme -
  H9L13_RS01815 (H9L13_01815) - 345429..346726 (+) 1298 Protein_357 MFS transporter -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17826.43 Da        Isoelectric Point: 4.8419

>NTDB_id=478005 H9L13_RS01785 WP_187538504.1 341351..341848(+) (ssb) [Sphingomonas lutea strain KCTC 23642]
MAGVNKVILVGNLGADPEARSLNNGGEVVNMRVATSENWKDRDGNRQERTEWHNVTIFNENLGRVAKSYLKKGSKVYLEG
QLQTRKWQDQSGNDRYTTEIVLQRFRGELVLLDSRGEGGGGGGSYGDDDGAFGGFSGGGGGGSSRPQSRPQPAAFDTDLD
DDVPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=478005 H9L13_RS01785 WP_187538504.1 341351..341848(+) (ssb) [Sphingomonas lutea strain KCTC 23642]
ATGGCGGGCGTGAACAAGGTGATCCTGGTCGGCAATCTCGGCGCGGACCCGGAGGCGCGGTCGCTCAACAACGGCGGCGA
AGTGGTCAACATGCGCGTCGCCACGTCGGAAAACTGGAAGGACCGCGACGGCAACCGCCAGGAACGGACCGAATGGCACA
ATGTCACCATTTTCAACGAGAATCTCGGCCGGGTCGCCAAAAGCTATTTGAAAAAGGGCTCGAAGGTCTATCTCGAAGGC
CAGCTCCAGACCCGCAAGTGGCAGGACCAGTCGGGTAACGACCGCTACACCACCGAAATCGTGCTCCAGCGCTTCCGCGG
CGAACTCGTCCTGCTCGACAGCCGCGGCGAAGGCGGCGGTGGCGGCGGCAGCTATGGCGATGACGACGGCGCATTCGGCG
GCTTCAGTGGGGGTGGCGGCGGCGGATCGTCCCGCCCGCAATCGCGCCCACAGCCGGCGGCATTCGATACCGACCTCGAC
GACGACGTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9SIM7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.872

100

0.545
  ssb Vibrio cholerae strain A1552

48.851

100

0.515
  ssb Neisseria meningitidis MC58

43.503

100

0.467
  ssb Neisseria gonorrhoeae MS11

43.503

100

0.467