Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H9L12_RS11935 Genome accession   NZ_CP060717
Coordinates   2329218..2329718 (+) Length   166 a.a.
NCBI ID   WP_187541914.1    Uniprot ID   A0A7G9SAP0
Organism   Sphingomonas rhizophila strain KACC 19189     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2324218..2334718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9L12_RS11910 (H9L12_11910) - 2324346..2325425 (-) 1080 WP_187541909.1 alkene reductase -
  H9L12_RS11915 (H9L12_11915) - 2325537..2326349 (+) 813 WP_187541910.1 DMT family transporter -
  H9L12_RS11920 (H9L12_11920) - 2326355..2327008 (+) 654 WP_187541911.1 COQ9 family protein -
  H9L12_RS11925 (H9L12_11925) - 2327054..2327308 (+) 255 WP_187541912.1 FeoA family protein -
  H9L12_RS11930 (H9L12_11930) - 2327305..2329155 (+) 1851 WP_187541913.1 ferrous iron transporter B -
  H9L12_RS11935 (H9L12_11935) ssb 2329218..2329718 (+) 501 WP_187541914.1 single-stranded DNA-binding protein Machinery gene
  H9L12_RS11940 (H9L12_11940) - 2329725..2330246 (-) 522 WP_246450398.1 DUF177 domain-containing protein -
  H9L12_RS11945 (H9L12_11945) - 2330243..2330755 (-) 513 WP_187541915.1 ubiquinol-cytochrome C chaperone family protein -
  H9L12_RS11950 (H9L12_11950) bamE 2330879..2331340 (+) 462 WP_187541916.1 outer membrane protein assembly factor BamE -
  H9L12_RS11955 (H9L12_11955) - 2331394..2332155 (+) 762 WP_187541917.1 tryptophan 2,3-dioxygenase family protein -
  H9L12_RS13755 - 2332089..2332448 (-) 360 WP_246450399.1 hypothetical protein -
  H9L12_RS13760 - 2332811..2333314 (+) 504 WP_246450400.1 hypothetical protein -
  H9L12_RS11965 (H9L12_11965) - 2333311..2333727 (-) 417 WP_343060388.1 hypothetical protein -
  H9L12_RS14240 - 2333773..2333862 (-) 90 Protein_2424 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 17941.59 Da        Isoelectric Point: 5.0179

>NTDB_id=478002 H9L12_RS11935 WP_187541914.1 2329218..2329718(+) (ssb) [Sphingomonas rhizophila strain KACC 19189]
MAGVNKVILVGNLGQDPESRSFSNGGEVVNLRIATSENWKDRDGNRQEKTEWHSVAIFNENLGRVAKNYLRKGSKVYIEG
QLQTRKWQDQSGNDRYTTEIVLQKFRGELVLLDARGEGGGSGGGYGGGGYDDGGFGGSAQGGGGLRQQSRPQPAAFDTDL
DDDVPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=478002 H9L12_RS11935 WP_187541914.1 2329218..2329718(+) (ssb) [Sphingomonas rhizophila strain KACC 19189]
ATGGCCGGCGTGAACAAGGTGATTTTGGTCGGCAACCTCGGGCAGGACCCGGAAAGCCGCTCGTTCAGCAACGGAGGCGA
GGTCGTCAACCTGCGCATCGCGACGTCGGAAAACTGGAAGGACCGCGACGGCAACCGGCAGGAAAAGACCGAATGGCATT
CCGTTGCGATCTTCAACGAGAATCTTGGCCGCGTCGCCAAGAATTACCTGCGCAAGGGCAGCAAGGTCTACATCGAAGGC
CAATTGCAGACCCGCAAGTGGCAGGACCAGTCGGGTAACGACCGCTACACCACCGAGATCGTGCTCCAGAAATTTCGCGG
TGAACTCGTCCTGCTCGATGCCCGCGGCGAAGGTGGCGGGTCGGGTGGCGGCTATGGCGGAGGCGGCTACGATGACGGCG
GCTTCGGCGGTTCGGCCCAAGGCGGTGGCGGATTGCGCCAGCAGTCGCGCCCACAGCCGGCGGCATTCGACACCGACCTG
GACGACGACGTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9SAP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.872

100

0.542
  ssb Vibrio cholerae strain A1552

50

100

0.524
  ssb Neisseria gonorrhoeae MS11

39.674

100

0.44
  ssb Neisseria meningitidis MC58

39.13

100

0.434