Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   NMBB_RS04775 Genome accession   NC_017505
Coordinates   905818..906756 (+) Length   312 a.a.
NCBI ID   WP_002222655.1    Uniprot ID   -
Organism   Neisseria meningitidis alpha710     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 905818..920435 905818..906756 within 0


Gene organization within MGE regions


Location: 905818..920435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBB_RS04775 (NMBB_0994) pilJ 905818..906756 (+) 939 WP_002222655.1 PilW family protein Machinery gene
  NMBB_RS04780 (NMBB_0995) pilK 906735..907331 (+) 597 WP_002222654.1 pilus assembly protein Machinery gene
  NMBB_RS04785 (NMBB_0996) pilX 907336..907809 (+) 474 WP_021438285.1 PilX family type IV pilin Machinery gene
  NMBB_RS04790 (NMBB_0998) - 908412..908837 (-) 426 Protein_894 AzlC family ABC transporter permease -
  NMBB_RS04795 (NMBB_0999) dut 908982..909434 (+) 453 WP_002222651.1 dUTP diphosphatase -
  NMBB_RS04800 (NMBB_1000) dapC 909510..910697 (+) 1188 WP_002222650.1 succinyldiaminopimelate transaminase -
  NMBB_RS04805 (NMBB_1001) yaaA 910959..911738 (+) 780 WP_002222649.1 peroxide stress protein YaaA -
  NMBB_RS04820 (NMBB_1003A) - 912270..913468 (+) 1199 Protein_898 integrase arm-type DNA-binding domain-containing protein -
  NMBB_RS04825 (NMBB_1004) - 913623..914003 (+) 381 WP_002220683.1 type II toxin-antitoxin system PemK/MazF family toxin -
  NMBB_RS04835 (NMBB_1007A) - 914551..914907 (+) 357 WP_002223441.1 DUF4760 domain-containing protein -
  NMBB_RS04840 (NMBB_1010) - 915776..916693 (+) 918 WP_002219437.1 KilA-N domain-containing protein -
  NMBB_RS04845 (NMBB_1011) - 916751..916960 (-) 210 WP_002220687.1 hypothetical protein -
  NMBB_RS12480 - 916957..917097 (-) 141 WP_002223442.1 hypothetical protein -
  NMBB_RS04850 (NMBB_1011A) - 917097..917288 (-) 192 WP_002219435.1 type ISP restriction/modification enzyme -
  NMBB_RS04855 (NMBB_1012) - 917291..917584 (-) 294 WP_002220689.1 hypothetical protein -
  NMBB_RS04860 (NMBB_1013) - 917581..917841 (-) 261 WP_002223443.1 hypothetical protein -
  NMBB_RS04865 (NMBB_1014) - 917876..918091 (-) 216 WP_002219434.1 hypothetical protein -
  NMBB_RS04870 (NMBB_1015) - 918161..919015 (-) 855 WP_002219433.1 YfdQ family protein -
  NMBB_RS04875 (NMBB_1016) - 919040..919399 (-) 360 WP_002219432.1 hypothetical protein -
  NMBB_RS04880 (NMBB_1017) - 919467..919667 (-) 201 WP_002219431.1 hypothetical protein -
  NMBB_RS04885 (NMBB_1018) - 919911..920336 (-) 426 WP_002219430.1 hypothetical protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34323.99 Da        Isoelectric Point: 9.2006

>NTDB_id=47790 NMBB_RS04775 WP_002222655.1 905818..906756(+) (pilJ) [Neisseria meningitidis alpha710]
MKRKMLNVPKGNYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFTSRKLNDAANERLAAQQDLRNAATLIVRDARMAGGFG
CFNMSEHPATDVVSDVAPKNRFFSLKRNSTNKLIPITESSNINYQNFFQVDSALIFQYGIDDLDASAETVVVSSCSKIAK
PGKKISTLQEAKSALQITNDDKQNGNITRQRHVVNAYAVGRIAGEEGLFRFQLDDKGKWGNPQLLAKKIRHMKVRYIYVS
DCPEDDDAGKEEKFKYTGTFDSSTNAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRGGNVCANRTL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=47790 NMBB_RS04775 WP_002222655.1 905818..906756(+) (pilJ) [Neisseria meningitidis alpha710]
ATGAAACGTAAAATGCTAAACGTACCAAAAGGCAATTATGATGGTATGAAGGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCATGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTCACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCGCACAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCAGGGGGCTTCGGT
TGTTTCAATATGTCCGAGCATCCTGCAACTGATGTTGTTTCCGATGTGGCGCCAAAAAACCGTTTTTTTTCCTTAAAAAG
GAACAGTACAAATAAACTTATCCCCATAACGGAATCTTCAAATATCAATTATCAGAATTTTTTCCAGGTTGATAGCGCAT
TGATTTTTCAATACGGAATCGATGATCTTGATGCGAGTGCTGAGACTGTTGTAGTCAGCAGCTGTTCCAAAATAGCAAAA
CCGGGTAAGAAAATATCTACCTTGCAAGAAGCAAAGAGTGCATTACAGATTACTAATGATGATAAACAAAATGGAAATAT
CACCCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGGTGAGGAAGGTTTGTTCCGCTTCCAATTGG
ATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGATTAGACATATGAAAGTGCGGTATATCTATGTTTCC
GACTGTCCTGAAGATGACGATGCCGGCAAAGAGGAAAAATTCAAATATACGGGTACATTCGACAGCTCCACAAATGCTGT
TACGCCCGCCGGGGTGGAGGTTTTATTGAGTAGCGGTACTGATACCAAGATTGCCGCTTCTTCAGACAATCATATTTATG
CTTACCGTATCGATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACACTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

82.278

100

0.833

Multiple sequence alignment