Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H9L41_RS19670 Genome accession   NZ_CP060704
Coordinates   4663752..4664294 (+) Length   180 a.a.
NCBI ID   WP_028444972.1    Uniprot ID   -
Organism   Chitinimonas koreensis strain R2A43-10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4658752..4669294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9L41_RS19660 (H9L41_19660) - 4661539..4662018 (-) 480 WP_028444974.1 hypothetical protein -
  H9L41_RS19665 (H9L41_19665) - 4662241..4663674 (+) 1434 WP_028444973.1 MFS transporter -
  H9L41_RS19670 (H9L41_19670) ssb 4663752..4664294 (+) 543 WP_028444972.1 single-stranded DNA-binding protein Machinery gene
  H9L41_RS19675 (H9L41_19675) - 4664425..4664712 (-) 288 WP_028444971.1 hypothetical protein -
  H9L41_RS19680 (H9L41_19680) - 4664778..4665524 (-) 747 WP_051318744.1 hypothetical protein -
  H9L41_RS19685 (H9L41_19685) - 4665568..4665825 (-) 258 WP_028444970.1 hypothetical protein -
  H9L41_RS19690 (H9L41_19690) - 4665834..4666163 (-) 330 WP_028444969.1 winged helix-turn-helix domain-containing protein -
  H9L41_RS19695 (H9L41_19695) - 4666375..4668540 (-) 2166 WP_028444968.1 UvrD-helicase domain-containing protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19415.55 Da        Isoelectric Point: 5.9440

>NTDB_id=477865 H9L41_RS19670 WP_028444972.1 4663752..4664294(+) (ssb) [Chitinimonas koreensis strain R2A43-10]
MASLNKVLLIGNLGRDPEMRYMPDGAAICNFSIATTETWKDKNSGQKQEKTEWHNIVMYRRLAEIAGQYLKKGSSVYIEG
RLQTRKWQDKNTGQDRYTTEILADEMKMLGGRAGSGMGGGNADYDQSPPSYGGGNDSPAPAPRGGGMGGGMGGGNQGGGQ
SRPAPQKPQSFDDFEDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=477865 H9L41_RS19670 WP_028444972.1 4663752..4664294(+) (ssb) [Chitinimonas koreensis strain R2A43-10]
ATGGCATCGCTCAACAAAGTCCTGCTCATCGGCAACCTGGGACGCGACCCCGAAATGCGCTACATGCCCGACGGCGCCGC
CATCTGCAATTTCAGCATCGCCACCACCGAGACCTGGAAGGACAAGAACAGCGGTCAGAAGCAGGAAAAGACCGAGTGGC
ACAATATCGTGATGTACCGCCGCCTGGCCGAGATCGCCGGCCAGTACCTGAAGAAGGGCAGCTCGGTCTACATCGAGGGC
CGCCTGCAGACGCGCAAGTGGCAGGACAAGAACACCGGGCAGGACCGCTACACCACCGAGATCCTGGCCGACGAGATGAA
GATGCTGGGCGGCCGCGCCGGCAGCGGCATGGGCGGCGGCAACGCCGACTACGACCAGTCGCCGCCGAGCTACGGCGGTG
GCAACGACTCGCCGGCTCCGGCCCCGCGCGGCGGCGGCATGGGTGGCGGGATGGGCGGCGGCAACCAAGGCGGCGGCCAA
TCGCGGCCGGCGCCGCAGAAGCCGCAGAGCTTCGACGATTTCGAGGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

53.039

100

0.533
  ssb Glaesserella parasuis strain SC1401

50.265

100

0.528
  ssb Vibrio cholerae strain A1552

50

100

0.528
  ssb Neisseria meningitidis MC58

51.955

99.444

0.517