Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H8M03_RS08935 Genome accession   NZ_CP060697
Coordinates   1791422..1791907 (+) Length   161 a.a.
NCBI ID   WP_187479104.1    Uniprot ID   A0A7G9L0K0
Organism   Sphingomonas sabuli strain sand1-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1786422..1796907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8M03_RS08905 (H8M03_08905) ribH 1786536..1786958 (+) 423 WP_187479098.1 6,7-dimethyl-8-ribityllumazine synthase -
  H8M03_RS08910 (H8M03_08910) - 1786955..1787581 (-) 627 WP_187479099.1 heme-binding protein -
  H8M03_RS08915 (H8M03_08915) - 1787675..1788568 (+) 894 WP_187479100.1 DMT family transporter -
  H8M03_RS08920 (H8M03_08920) - 1788577..1789224 (+) 648 WP_187479101.1 COQ9 family protein -
  H8M03_RS08925 (H8M03_08925) - 1789279..1789548 (+) 270 WP_246448827.1 FeoA family protein -
  H8M03_RS08930 (H8M03_08930) - 1789558..1791408 (+) 1851 WP_187479103.1 ferrous iron transporter B -
  H8M03_RS08935 (H8M03_08935) ssb 1791422..1791907 (+) 486 WP_187479104.1 single-stranded DNA-binding protein Machinery gene
  H8M03_RS08940 (H8M03_08940) - 1791904..1792869 (-) 966 WP_222931868.1 alpha/beta hydrolase -
  H8M03_RS08945 (H8M03_08945) - 1792886..1793407 (-) 522 WP_187479105.1 DUF177 domain-containing protein -
  H8M03_RS08950 (H8M03_08950) - 1793407..1793922 (-) 516 WP_187479106.1 ubiquinol-cytochrome C chaperone family protein -
  H8M03_RS08955 (H8M03_08955) - 1794049..1794507 (+) 459 WP_187479107.1 outer membrane protein assembly factor BamE -
  H8M03_RS08960 (H8M03_08960) - 1794541..1795308 (+) 768 WP_187479108.1 tryptophan 2,3-dioxygenase -
  H8M03_RS08965 (H8M03_08965) - 1795305..1796462 (+) 1158 WP_187479109.1 class V aminotransferase -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17506.09 Da        Isoelectric Point: 5.0179

>NTDB_id=477759 H8M03_RS08935 WP_187479104.1 1791422..1791907(+) (ssb) [Sphingomonas sabuli strain sand1-3]
MAGVNKVILVGNLGADPESRSLNNGGEVVNMRVATSESWKDRDGNRQERTEWHNVVIFNENLGRVAKNYLRKGSKVYLEG
QIQTRKWQGQDGNDRYTTEIVLQRFRGELVLLDAAGGGGGGGGGGRSDYGGGDDEYGGGSRQQSRPQPATFSNDLDDDVP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=477759 H8M03_RS08935 WP_187479104.1 1791422..1791907(+) (ssb) [Sphingomonas sabuli strain sand1-3]
ATGGCGGGCGTGAACAAGGTAATCCTGGTCGGCAATCTGGGGGCTGATCCGGAATCGCGCTCGCTCAACAACGGTGGCGA
AGTGGTCAACATGCGCGTCGCCACGTCGGAAAGCTGGAAGGACCGCGACGGCAACCGGCAGGAACGCACCGAATGGCACA
ACGTCGTCATCTTCAACGAAAACCTCGGCCGCGTGGCGAAGAACTATCTGCGCAAGGGATCGAAGGTCTATCTCGAAGGG
CAGATCCAGACCCGCAAGTGGCAGGGCCAGGACGGTAACGACCGCTACACCACCGAAATCGTCCTGCAGCGCTTCCGCGG
CGAACTGGTTCTGCTCGACGCCGCAGGTGGCGGCGGCGGCGGTGGCGGCGGTGGCCGCAGCGACTACGGCGGCGGCGACG
ACGAATATGGCGGCGGATCGCGCCAGCAATCGCGGCCGCAGCCGGCGACGTTCAGCAACGACCTCGACGACGACGTACCG
TTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9L0K0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.316

100

0.547
  ssb Vibrio cholerae strain A1552

44.253

100

0.478
  ssb Neisseria gonorrhoeae MS11

41.667

100

0.466
  ssb Neisseria meningitidis MC58

41.667

100

0.466