Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NMV_RS04570 Genome accession   NC_017501
Coordinates   921076..921600 (+) Length   174 a.a.
NCBI ID   WP_014573914.1    Uniprot ID   A0A9K2KNA4
Organism   Neisseria meningitidis 8013     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 916076..926600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMV_RS04545 (NMV_0921) - 917321..917811 (+) 491 Protein_829 REP-associated tyrosine transposase -
  NMV_RS15795 - 917848..918269 (+) 422 Protein_830 hypothetical protein -
  NMV_RS04560 (NMV_0924) - 918957..919580 (+) 624 WP_002212974.1 lytic transglycosylase domain-containing protein -
  NMV_RS04565 (NMV_0925) - 919691..921073 (+) 1383 WP_048813461.1 MFS transporter -
  NMV_RS04570 (NMV_0926) ssb 921076..921600 (+) 525 WP_014573914.1 single-stranded DNA-binding protein Machinery gene
  NMV_RS04575 (NMV_0927) - 922125..923048 (+) 924 WP_014573915.1 DMT family transporter -
  NMV_RS04580 (NMV_0928) fumC 923113..924501 (-) 1389 WP_014573916.1 class II fumarate hydratase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19409.62 Da        Isoelectric Point: 5.3443

>NTDB_id=47738 NMV_RS04570 WP_014573914.1 921076..921600(+) (ssb) [Neisseria meningitidis 8013]
MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNGQRVERTEWHNITMYRKLAEIAGQYLKKGGLVYLEGRI
QSRKYQGKDGIERTAYDIVANEMKMLGGRNENSGGAPYEEGYGQSQEAYQRPAQQSRQPASDAPSHPQEAPAAPRLQPVP
AAAPVEDIDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=47738 NMV_RS04570 WP_014573914.1 921076..921600(+) (ssb) [Neisseria meningitidis 8013]
ATGTCATTGAACAAAGTTATCCTTATCGGCCGCCTCGGACGCGATCCCGAAGTGCGCTATATGCCCAACGGCGAGGCGGT
GTGTAATTTCAGCGTCGCCACCAGCGAAACTTGGAACGACCGCAACGGCCAACGTGTAGAGCGTACTGAGTGGCACAACA
TCACGATGTACCGCAAACTGGCGGAAATTGCCGGGCAATACCTCAAAAAAGGCGGGCTGGTTTATCTGGAAGGCAGAATC
CAAAGCCGCAAATACCAAGGCAAAGACGGCATCGAACGTACCGCTTACGATATTGTCGCCAACGAAATGAAAATGTTGGG
CGGGCGCAATGAAAACAGCGGCGGCGCGCCTTACGAGGAAGGTTACGGTCAGAGTCAGGAGGCTTACCAACGCCCCGCGC
AGCAAAGCCGGCAGCCCGCCTCCGACGCGCCGTCCCATCCCCAAGAAGCACCAGCCGCGCCGCGCCTCCAACCCGTGCCT
GCCGCCGCCCCGGTCGAGGACATTGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

99.425

100

0.994
  ssb Neisseria gonorrhoeae MS11

98.276

100

0.983
  ssb Vibrio cholerae strain A1552

47.778

100

0.494
  ssb Glaesserella parasuis strain SC1401

43.956

100

0.46

Multiple sequence alignment