NTDB

Overview

Name	crp	Type	Regulator
Locus tag	J1G54_RS01670	Genome accession	NZ_CP071491
Coordinates	295936..296610 (-)	Length	224 a.a.
NCBI ID	WP_021111230.1	Uniprot ID	-
Organism	Glaesserella parasuis strain GHP1807
Function	promote expression of competence genes (predicted from homology) Competence regulation

Genomic Context

Location: 290936..301610

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J1G54_RS01645 (J1G54_01645)	lolB	291093..291725 (+)	633	WP_021110345.1	lipoprotein insertase outer membrane protein LolB	-
J1G54_RS01650 (J1G54_01650)	ispE	291727..292572 (+)	846	WP_075606354.1	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	-
J1G54_RS01655 (J1G54_01655)	-	292600..293550 (+)	951	WP_005713153.1	ribose-phosphate pyrophosphokinase	-
J1G54_RS01660 (J1G54_01660)	pyrD	293922..294929 (+)	1008	WP_021111227.1	quinone-dependent dihydroorotate dehydrogenase	-
J1G54_RS01665 (J1G54_01665)	-	295245..295391 (-)	147	WP_021110348.1	hypothetical protein	-
J1G54_RS01670 (J1G54_01670)	crp	295936..296610 (-)	675	WP_021111230.1	cAMP-activated global transcriptional regulator CRP	Regulator
J1G54_RS01675 (J1G54_01675)	-	296677..296901 (-)	225	WP_005713165.1	YheU family protein	-
J1G54_RS01680 (J1G54_01680)	slmA	296909..297514 (-)	606	WP_021114417.1	nucleoid occlusion factor SlmA	-
J1G54_RS01685 (J1G54_01685)	dut	297523..297978 (-)	456	WP_021114418.1	dUTP diphosphatase	-
J1G54_RS01690 (J1G54_01690)	coaBC	297975..299180 (-)	1206	WP_207342787.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
J1G54_RS01695 (J1G54_01695)	radC	299350..300066 (+)	717	WP_075606357.1	RadC family protein	Machinery gene
J1G54_RS01700 (J1G54_01700)	rpmB	300192..300428 (+)	237	WP_006251446.1	50S ribosomal protein L28	-
J1G54_RS01705 (J1G54_01705)	rpmG	300440..300610 (+)	171	WP_005624479.1	50S ribosomal protein L33	-

Sequence

Protein

Download Length: 224 a.a. Molecular weight: 25169.13 Da Isoelectric Point: 6.8374

                                >NTDB_id=477310 J1G54_RS01670 WP_021111230.1 295936..296610(-) (crp) [Glaesserella parasuis strain GHP1807]

MQDVSISTAQLEDVSPLPSIHDPAVEWFLTNCHIHRYPAKYTLIHAGEDAESLFYIVSGAVSVFIKDEEGKEMLLTNLGQ

GEFVGEISLFEEKAQPRTAWVRTKGNCEIAEISYKKFKQLVHLNPDILMYLSAQMARRLRMTSRQVSNLAFLDVTGRIAQ

TLMNLAKMPDAMTHPQGMQIKITRQEIGQMVGCSRETVGRILKMLEDEGLISAHGKTIVVYGTR

Nucleotide

Download Length: 675 bp

                                >NTDB_id=477310 J1G54_RS01670 WP_021111230.1 295936..296610(-) (crp) [Glaesserella parasuis strain GHP1807]

ATGCAAGATGTTTCAATCTCAACCGCACAGCTTGAAGATGTCAGCCCATTACCATCCATTCACGATCCTGCGGTGGAATG

GTTTTTAACTAACTGTCATATTCATCGTTATCCAGCAAAATATACTTTAATTCACGCAGGTGAAGATGCTGAATCACTGT

TTTATATTGTCAGCGGAGCTGTGTCTGTCTTTATCAAGGATGAAGAAGGCAAGGAGATGTTATTAACCAATTTAGGCCAA

GGCGAATTTGTCGGTGAAATCAGCCTTTTTGAAGAAAAGGCTCAGCCTCGCACTGCTTGGGTAAGAACTAAAGGTAACTG

TGAAATTGCTGAAATTTCTTATAAAAAATTCAAGCAATTAGTGCATCTTAATCCAGATATTTTGATGTATTTATCCGCAC

AGATGGCTCGCCGTTTACGAATGACATCAAGACAGGTTAGTAACCTAGCATTTCTTGATGTAACAGGTCGTATTGCTCAA

ACATTGATGAATTTAGCTAAAATGCCTGATGCGATGACTCACCCTCAGGGTATGCAGATTAAAATTACTCGCCAAGAAAT

TGGTCAAATGGTTGGTTGCTCACGAGAAACTGTAGGTCGTATTTTGAAAATGCTGGAGGATGAAGGGTTAATTTCTGCAC

ATGGTAAAACTATCGTTGTGTATGGGACAAGATAA

Domains

Predicted by InterProScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(156-220)

Cyclic nucleotide-binding domain (cNMP_binding)

(35-121)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
crp	Vibrio cholerae strain A1552	75.369	90.625	0.683
crp	Haemophilus influenzae Rd KW20	72.906	90.625	0.661
crp	Acinetobacter baumannii D1279779	48	89.286	0.429

Detailed information NTG0477310