Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   J1G54_RS01695 Genome accession   NZ_CP071491
Coordinates   299350..300066 (+) Length   238 a.a.
NCBI ID   WP_075606357.1    Uniprot ID   -
Organism   Glaesserella parasuis strain GHP1807     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 294350..305066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G54_RS01665 (J1G54_01665) - 295245..295391 (-) 147 WP_021110348.1 hypothetical protein -
  J1G54_RS01670 (J1G54_01670) crp 295936..296610 (-) 675 WP_021111230.1 cAMP-activated global transcriptional regulator CRP Regulator
  J1G54_RS01675 (J1G54_01675) - 296677..296901 (-) 225 WP_005713165.1 YheU family protein -
  J1G54_RS01680 (J1G54_01680) slmA 296909..297514 (-) 606 WP_021114417.1 nucleoid occlusion factor SlmA -
  J1G54_RS01685 (J1G54_01685) dut 297523..297978 (-) 456 WP_021114418.1 dUTP diphosphatase -
  J1G54_RS01690 (J1G54_01690) coaBC 297975..299180 (-) 1206 WP_207342787.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  J1G54_RS01695 (J1G54_01695) radC 299350..300066 (+) 717 WP_075606357.1 RadC family protein Machinery gene
  J1G54_RS01700 (J1G54_01700) rpmB 300192..300428 (+) 237 WP_006251446.1 50S ribosomal protein L28 -
  J1G54_RS01705 (J1G54_01705) rpmG 300440..300610 (+) 171 WP_005624479.1 50S ribosomal protein L33 -
  J1G54_RS01710 (J1G54_01710) - 300766..302727 (+) 1962 WP_035523329.1 TonB-dependent receptor domain-containing protein -
  J1G54_RS01715 (J1G54_01715) - 302896..303261 (+) 366 WP_021113212.1 YgiW/YdeI family stress tolerance OB fold protein -
  J1G54_RS01720 (J1G54_01720) ciaR 303322..303993 (+) 672 WP_021111236.1 response regulator Regulator

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27306.46 Da        Isoelectric Point: 4.6746

>NTDB_id=477311 J1G54_RS01695 WP_075606357.1 299350..300066(+) (radC) [Glaesserella parasuis strain GHP1807]
MNESSYELMPREKLLKFGAEALSDAELLAIFLRTGIKGIPVMDLSESVLTAFGSLRGLLSATLEDFCKIKGLGQIQYIQL
QATKEMTKRYLSQQMKLNEMVDSPYLAVMYFQSELESWEREVFMVIFLDNQNRLIKTEKMFYGTINQASVHPREIIKEAL
KCNAAAILVAHNHPSGNCDPSEADRFLTRKIEMACDLVDIRFVDHIIVGKGDYFSFEEEKFEQENYEFSPCLDELKQV

Nucleotide


Download         Length: 717 bp        

>NTDB_id=477311 J1G54_RS01695 WP_075606357.1 299350..300066(+) (radC) [Glaesserella parasuis strain GHP1807]
ATGAATGAAAGTTCTTATGAATTAATGCCAAGAGAAAAATTACTAAAATTTGGGGCAGAAGCTTTAAGTGATGCGGAGCT
ATTGGCAATCTTTTTACGCACAGGAATTAAAGGGATACCTGTAATGGATTTATCAGAAAGTGTATTAACTGCCTTTGGCT
CATTACGAGGATTGCTGTCAGCGACATTAGAGGATTTTTGTAAAATCAAAGGGTTAGGGCAAATTCAGTACATTCAACTT
CAGGCCACGAAAGAGATGACGAAACGCTATCTATCCCAACAAATGAAACTCAATGAAATGGTAGATAGTCCCTATTTGGC
GGTAATGTATTTTCAATCGGAATTAGAATCTTGGGAGCGAGAGGTGTTTATGGTGATCTTTTTAGATAACCAAAATAGGC
TAATTAAAACAGAAAAAATGTTTTATGGCACGATCAACCAAGCATCTGTTCATCCTCGAGAAATCATCAAAGAGGCCTTA
AAGTGTAATGCTGCCGCCATTTTAGTTGCTCATAACCACCCATCTGGCAATTGTGATCCAAGTGAGGCTGATCGCTTTCT
AACTCGAAAAATCGAAATGGCGTGCGATTTAGTCGATATTCGCTTTGTTGATCATATTATTGTTGGCAAAGGTGACTATT
TTTCGTTCGAAGAAGAGAAGTTTGAACAGGAAAATTACGAATTTTCCCCTTGTTTAGATGAGCTAAAGCAAGTATAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(8-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

61.111

90.756

0.555