Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   J1G54_RS01720 Genome accession   NZ_CP071491
Coordinates   303322..303993 (+) Length   223 a.a.
NCBI ID   WP_021111236.1    Uniprot ID   -
Organism   Glaesserella parasuis strain GHP1807     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 298322..308993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G54_RS01695 (J1G54_01695) radC 299350..300066 (+) 717 WP_075606357.1 RadC family protein Machinery gene
  J1G54_RS01700 (J1G54_01700) rpmB 300192..300428 (+) 237 WP_006251446.1 50S ribosomal protein L28 -
  J1G54_RS01705 (J1G54_01705) rpmG 300440..300610 (+) 171 WP_005624479.1 50S ribosomal protein L33 -
  J1G54_RS01710 (J1G54_01710) - 300766..302727 (+) 1962 WP_035523329.1 TonB-dependent receptor domain-containing protein -
  J1G54_RS01715 (J1G54_01715) - 302896..303261 (+) 366 WP_021113212.1 YgiW/YdeI family stress tolerance OB fold protein -
  J1G54_RS01720 (J1G54_01720) ciaR 303322..303993 (+) 672 WP_021111236.1 response regulator Regulator
  J1G54_RS01725 (J1G54_01725) qseC 303980..305380 (+) 1401 WP_021111237.1 quorum sensing histidine kinase QseC -
  J1G54_RS01730 (J1G54_01730) - 305502..305564 (+) 63 Protein_340 RNA-guided endonuclease TnpB family protein -
  J1G54_RS01735 (J1G54_01735) - 305770..306057 (+) 288 WP_005713186.1 co-chaperone GroES -
  J1G54_RS01740 (J1G54_01740) groL 306168..307811 (+) 1644 WP_021111239.1 chaperonin GroEL -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 25454.15 Da        Isoelectric Point: 6.0355

>NTDB_id=477312 J1G54_RS01720 WP_021111236.1 303322..303993(+) (ciaR) [Glaesserella parasuis strain GHP1807]
MRILLVEDDPLIGEGLKLGLSKSGFSVDWFADGRSGLEALSSAPYDAVVLDLTLPKMDGLEVLQSWRRANQDVPVLILTA
RDTLDERITGLQRGADDYLCKPFALAEVVARLQALIRRRYGHTNPVIEHSLVKFDPNQRKVFLREQEVTLTTREYNLLEL
FMHNKERVLTRSFIEEKLYTWDDEVSSNALEVHIYNLRQKLGKQFIRTVHGVGYALGKNDEVA

Nucleotide


Download         Length: 672 bp        

>NTDB_id=477312 J1G54_RS01720 WP_021111236.1 303322..303993(+) (ciaR) [Glaesserella parasuis strain GHP1807]
ATGCGTATTTTATTAGTTGAAGACGATCCGTTGATCGGTGAAGGGCTAAAACTTGGTTTGAGTAAATCTGGCTTTAGTGT
GGACTGGTTTGCCGATGGCAGATCTGGCTTAGAGGCGTTAAGTTCTGCTCCTTATGATGCCGTTGTTCTCGATCTCACCT
TGCCTAAAATGGACGGACTTGAGGTGTTACAAAGTTGGCGACGGGCAAATCAAGATGTGCCAGTGCTAATTTTGACTGCA
AGAGATACCCTTGATGAACGTATCACTGGGCTACAACGTGGTGCAGATGATTATCTCTGTAAACCTTTTGCTCTCGCAGA
AGTTGTAGCTCGTTTACAAGCTTTGATCCGCCGTCGTTATGGGCATACCAACCCCGTGATTGAACATAGTTTAGTTAAAT
TCGATCCAAACCAACGCAAAGTGTTTCTTCGGGAGCAAGAAGTCACCCTAACCACACGAGAGTATAATTTACTTGAGCTA
TTTATGCACAATAAAGAGCGTGTTCTCACCCGTTCTTTTATTGAAGAGAAACTCTATACTTGGGACGATGAAGTCAGTAG
CAACGCCCTTGAAGTCCATATCTACAATTTACGCCAAAAACTCGGAAAACAGTTTATTCGTACCGTACACGGTGTTGGCT
ATGCCTTAGGAAAAAACGATGAAGTTGCTTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(146-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

35.683

100

0.363
  ciaR Streptococcus pneumoniae D39

35.683

100

0.363
  ciaR Streptococcus pneumoniae R6

35.683

100

0.363
  ciaR Streptococcus pneumoniae TIGR4

35.683

100

0.363