Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYF   Type   Machinery gene
Locus tag   H7790_RS00985 Genome accession   NZ_CP060645
Coordinates   154613..155047 (+) Length   144 a.a.
NCBI ID   WP_002992738.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY1349     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 149613..160047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7790_RS00955 (H7790_00955) - 151282..151647 (+) 366 WP_032460335.1 DUF1033 family protein -
  H7790_RS00960 (H7790_00960) comYA 151740..152678 (+) 939 WP_115230343.1 competence type IV pilus ATPase ComGA Machinery gene
  H7790_RS00965 (H7790_00965) comYB 152614..153648 (+) 1035 WP_011054115.1 competence type IV pilus assembly protein ComGB Machinery gene
  H7790_RS00970 (H7790_00970) comYC 153650..153976 (+) 327 WP_002986552.1 competence type IV pilus major pilin ComGC Machinery gene
  H7790_RS00975 (H7790_00975) comGD 153951..154379 (+) 429 WP_023605232.1 competence type IV pilus minor pilin ComGD -
  H7790_RS00980 (H7790_00980) comGE 154336..154620 (+) 285 WP_002987779.1 competence type IV pilus minor pilin ComGE -
  H7790_RS00985 (H7790_00985) comYF 154613..155047 (+) 435 WP_002992738.1 competence type IV pilus minor pilin ComGF Machinery gene
  H7790_RS00990 (H7790_00990) comGG 155031..155357 (+) 327 WP_010921801.1 competence type IV pilus minor pilin ComGG -
  H7790_RS00995 (H7790_00995) comYH 155455..156408 (+) 954 WP_115230344.1 class I SAM-dependent methyltransferase Machinery gene
  H7790_RS01000 (H7790_01000) - 156467..157663 (+) 1197 WP_030126459.1 acetate kinase -
  H7790_RS01005 (H7790_01005) - 157849..158157 (+) 309 Protein_166 hypothetical protein -
  H7790_RS01010 (H7790_01010) proC 158240..159010 (-) 771 WP_002986527.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16645.27 Da        Isoelectric Point: 10.2526

>NTDB_id=477288 H7790_RS00985 WP_002992738.1 154613..155047(+) (comYF) [Streptococcus pyogenes strain TSPY1349]
MSKQLSNIKAFTLLEALIALLVISGSLLVYQGLTQTLLKRSHYLARHDQDNWLLFSHQLREELSGARFYKVADNKLYVEK
GKKVLAFGQFKSHDFRKSASNGKGYQPMLFGISRSHIHIEQSQICITLKWKSGLERTFYYAFQD

Nucleotide


Download         Length: 435 bp        

>NTDB_id=477288 H7790_RS00985 WP_002992738.1 154613..155047(+) (comYF) [Streptococcus pyogenes strain TSPY1349]
TTGAGTAAACAATTAAGTAACATAAAAGCTTTTACCCTTCTAGAGGCGTTAATAGCCTTACTCGTGATATCAGGGTCTTT
ATTGGTTTATCAAGGTTTGACCCAAACCCTCCTTAAACGTAGCCATTATCTAGCCCGTCATGATCAAGACAATTGGCTCT
TATTTTCTCATCAATTGCGAGAGGAGTTAAGTGGAGCAAGATTTTACAAAGTAGCTGATAATAAACTATACGTTGAAAAG
GGAAAGAAAGTACTAGCTTTTGGCCAATTTAAAAGTCATGATTTTCGAAAATCAGCTAGTAATGGAAAAGGGTATCAACC
CATGTTATTTGGAATATCACGTAGTCATATTCACATAGAGCAGTCACAGATTTGCATTACTTTAAAGTGGAAAAGTGGGT
TAGAAAGGACTTTTTATTATGCCTTTCAAGACTAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(41-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYF Streptococcus mutans UA140

51.079

96.528

0.493
  comYF Streptococcus mutans UA159

50.36

96.528

0.486
  comGF Lactococcus lactis subsp. cremoris KW2

46.715

95.139

0.444
  comGF/cglF Streptococcus mitis NCTC 12261

44.776

93.056

0.417
  comGF/cglF Streptococcus pneumoniae Rx1

43.609

92.361

0.403
  comGF/cglF Streptococcus pneumoniae D39

43.609

92.361

0.403
  comGF/cglF Streptococcus pneumoniae R6

43.609

92.361

0.403
  comGF/cglF Streptococcus pneumoniae TIGR4

43.609

92.361

0.403
  comGF/cglF Streptococcus mitis SK321

42.857

92.361

0.396