Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LLH_RS12160 | Genome accession | NC_017492 |
| Coordinates | 2345206..2345706 (-) | Length | 166 a.a. |
| NCBI ID | WP_011677241.1 | Uniprot ID | A0A0M2ZSZ2 |
| Organism | Lactococcus cremoris subsp. cremoris A76 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2345206..2367494 | 2345206..2345706 | within | 0 |
Gene organization within MGE regions
Location: 2345206..2367494
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LLH_RS12160 (llh_12700) | ssb | 2345206..2345706 (-) | 501 | WP_011677241.1 | single-stranded DNA-binding protein | Machinery gene |
| LLH_RS12165 (llh_12705) | rpsF | 2345736..2346029 (-) | 294 | WP_011677242.1 | 30S ribosomal protein S6 | - |
| LLH_RS12170 (llh_12710) | - | 2346223..2347077 (-) | 855 | WP_011677243.1 | undecaprenyl-diphosphate phosphatase | - |
| LLH_RS12175 (llh_12715) | - | 2347600..2349066 (+) | 1467 | WP_011677244.1 | amino acid permease | - |
| LLH_RS12180 (llh_12720) | dnaX | 2349100..2350761 (-) | 1662 | WP_014573393.1 | DNA polymerase III subunit gamma/tau | - |
| LLH_RS12185 (llh_12725) | - | 2350806..2351447 (-) | 642 | WP_014573394.1 | phosphotransferase | - |
| LLH_RS12190 (llh_12730) | - | 2351479..2351967 (-) | 489 | WP_011677247.1 | GAF domain-containing protein | - |
| LLH_RS12195 (llh_12735) | - | 2352051..2352323 (+) | 273 | WP_011677248.1 | chorismate mutase | - |
| LLH_RS12200 (llh_12740) | - | 2352357..2352806 (-) | 450 | WP_011677249.1 | hypothetical protein | - |
| LLH_RS12205 (llh_12750) | - | 2353096..2354280 (-) | 1185 | Protein_2352 | tyrosine-type recombinase/integrase | - |
| LLH_RS12210 | - | 2354728..2354892 (-) | 165 | WP_041168272.1 | hypothetical protein | - |
| LLH_RS12215 | - | 2355552..2355881 (-) | 330 | Protein_2354 | hypothetical protein | - |
| LLH_RS12220 (llh_12760) | - | 2356776..2356970 (-) | 195 | WP_014573398.1 | hypothetical protein | - |
| LLH_RS12225 | - | 2357043..2357273 (-) | 231 | WP_011834155.1 | hypothetical protein | - |
| LLH_RS12230 (llh_12765) | - | 2357377..2357931 (-) | 555 | WP_014573399.1 | hypothetical protein | - |
| LLH_RS12235 (llh_12770) | - | 2357941..2358327 (-) | 387 | WP_014573400.1 | helix-turn-helix domain-containing protein | - |
| LLH_RS12240 (llh_12780) | - | 2358604..2358810 (+) | 207 | WP_014573402.1 | helix-turn-helix transcriptional regulator | - |
| LLH_RS12245 | - | 2358812..2359060 (+) | 249 | WP_041168274.1 | hypothetical protein | - |
| LLH_RS12250 (llh_12790) | - | 2359310..2359999 (+) | 690 | WP_014573404.1 | Rha family transcriptional regulator | - |
| LLH_RS12255 (llh_12795) | - | 2360070..2360264 (+) | 195 | WP_014573405.1 | DUF1655 domain-containing protein | - |
| LLH_RS12260 (llh_12800) | - | 2360268..2360798 (+) | 531 | WP_014573406.1 | hypothetical protein | - |
| LLH_RS12265 (llh_12805) | - | 2360795..2361013 (+) | 219 | WP_014573407.1 | hypothetical protein | - |
| LLH_RS12270 (llh_12810) | - | 2361010..2361291 (+) | 282 | WP_014573408.1 | hypothetical protein | - |
| LLH_RS12275 (llh_12815) | - | 2361334..2361573 (+) | 240 | WP_041168276.1 | hypothetical protein | - |
| LLH_RS14695 | - | 2361570..2361824 (+) | 255 | WP_041168277.1 | hypothetical protein | - |
| LLH_RS12285 (llh_12820) | - | 2361821..2362135 (+) | 315 | WP_014573410.1 | hypothetical protein | - |
| LLH_RS12290 (llh_12825) | - | 2362132..2362467 (+) | 336 | WP_014573411.1 | hypothetical protein | - |
| LLH_RS12295 (llh_12830) | - | 2362464..2363258 (+) | 795 | WP_014573412.1 | bifunctional DNA primase/polymerase | - |
| LLH_RS12300 (llh_12835) | - | 2363269..2364903 (+) | 1635 | WP_014573413.1 | phage/plasmid primase, P4 family | - |
| LLH_RS12305 (llh_12840) | - | 2365114..2365296 (+) | 183 | WP_014573414.1 | hypothetical protein | - |
| LLH_RS12310 (llh_12845) | - | 2365323..2365931 (+) | 609 | WP_014573415.1 | hypothetical protein | - |
| LLH_RS12315 (llh_12850) | - | 2365940..2366530 (+) | 591 | WP_014573416.1 | HK97 family phage prohead protease | - |
| LLH_RS12320 | - | 2366744..2367073 (+) | 330 | WP_041168278.1 | hypothetical protein | - |
| LLH_RS12325 | - | 2367174..2367494 (+) | 321 | WP_041168280.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18233.05 Da Isoelectric Point: 5.2166
>NTDB_id=47718 LLH_RS12160 WP_011677241.1 2345206..2345706(-) (ssb) [Lactococcus cremoris subsp. cremoris A76]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSARDGMGGGASAGSYSAPSQSTNNTPRPQTNNNSATPNFGRDADPFGSSPMEIS
DDDLPF
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSARDGMGGGASAGSYSAPSQSTNNTPRPQTNNNSATPNFGRDADPFGSSPMEIS
DDDLPF
Nucleotide
Download Length: 501 bp
>NTDB_id=47718 LLH_RS12160 WP_011677241.1 2345206..2345706(-) (ssb) [Lactococcus cremoris subsp. cremoris A76]
ATGATTAACAATGTTGTATTAGTGGGACGCATTACTCGCGATCCTGAACTTCGTTACACCCCTCAAAATCAAGCTGTTGC
TACTTTTTCATTGGCTGTAAATCGTCAATTTAAAAATGCTAACGGTGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAAAATTTGGCAAATTGGGCTAAAAAAGGAGCTTTGATCGGTGTAACTGGTCGAATTCAAACACGT
AATTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGATAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGCGATGGTATGGGAGGCGGAGCTTCTGCCGGTTCATATTCTGCACCAAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAATAATAGTGCAACACCGAATTTCGGTCGTGATGCTGACCCATTTGGTAGCTCACCTATGGAAATCTCG
GATGATGACCTTCCATTCTAA
ATGATTAACAATGTTGTATTAGTGGGACGCATTACTCGCGATCCTGAACTTCGTTACACCCCTCAAAATCAAGCTGTTGC
TACTTTTTCATTGGCTGTAAATCGTCAATTTAAAAATGCTAACGGTGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAAAATTTGGCAAATTGGGCTAAAAAAGGAGCTTTGATCGGTGTAACTGGTCGAATTCAAACACGT
AATTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGATAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGCGATGGTATGGGAGGCGGAGCTTCTGCCGGTTCATATTCTGCACCAAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAATAATAGTGCAACACCGAATTTCGGTCGTGATGCTGACCCATTTGGTAGCTCACCTATGGAAATCTCG
GATGATGACCTTCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.884 |
100 |
0.62 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.395 |
100 |
0.584 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.855 |
0.373 |
| ssb | Glaesserella parasuis strain SC1401 |
33.898 |
100 |
0.361 |