Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   SPN032672_RS05925 Genome accession   NC_021003
Coordinates   1108261..1109160 (+) Length   299 a.a.
NCBI ID   WP_000904872.1    Uniprot ID   -
Organism   Streptococcus pneumoniae SPN032672     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1103261..1114160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPN032672_RS05900 - 1103879..1104832 (-) 954 WP_041179077.1 IS30-like element ISSpn8 family transposase -
  SPN032672_RS05905 rpmH 1105240..1105374 (+) 135 WP_000831905.1 50S ribosomal protein L34 -
  SPN032672_RS05910 - 1105580..1106551 (+) 972 Protein_1088 DUF1542 domain-containing protein -
  SPN032672_RS05915 - 1106856..1107629 (+) 774 WP_000575619.1 TatD family hydrolase -
  SPN032672_RS05920 rnmV 1107629..1108189 (+) 561 WP_000660005.1 ribonuclease M5 -
  SPN032672_RS05925 comR 1108261..1109160 (+) 900 WP_000904872.1 helix-turn-helix transcriptional regulator Regulator
  SPN032672_RS05930 - 1109429..1111459 (+) 2031 WP_000825273.1 bacteriocin-associated integral membrane family protein -
  SPN032672_RS05935 - 1111461..1112102 (+) 642 WP_000565531.1 ABC transporter ATP-binding protein -
  SPN032672_RS05940 - 1112095..1112388 (+) 294 Protein_1094 hypothetical protein -
  SPN032672_RS05945 rsmA 1112639..1113511 (+) 873 WP_001216845.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35327.19 Da        Isoelectric Point: 5.0853

>NTDB_id=47718 SPN032672_RS05925 WP_000904872.1 1108261..1109160(+) (comR) [Streptococcus pneumoniae SPN032672]
MLIGQKIKEIRIEKGVSRPYFCGDEQELTVRQLSRIESGASQPSLPKLAYIARRLGVPVYSLMPDFSALPPAYLELKYQI
LREPIYGKEEEYDKKEACLEEIYKTYFDNLPKEEQLACEVLQACLDTSRTRRPEYAELILEEHMSQIIEKEVYSTNDMLL
IRLFFYQMLIRKDLAKFINQIEKLMLFLLEQKKVTKLENFFIIRDTLISGMCCLEKVGVTDCFNDYLSCLQEIMDKTQDY
QKKPLVFMFLWKQALREERDFSLAESFYQSSKTFAKLIGDGFLVKKLTEEWQEDVKKYL

Nucleotide


Download         Length: 900 bp        

>NTDB_id=47718 SPN032672_RS05925 WP_000904872.1 1108261..1109160(+) (comR) [Streptococcus pneumoniae SPN032672]
ATGTTAATTGGTCAAAAAATTAAAGAGATTCGGATAGAAAAAGGAGTTAGTCGTCCATATTTTTGTGGAGATGAGCAAGA
ACTGACAGTTCGTCAACTGTCGCGAATTGAAAGTGGAGCTTCGCAACCGAGTTTGCCCAAGTTAGCCTATATTGCTCGCC
GGCTAGGAGTTCCAGTTTATAGCCTTATGCCGGATTTTTCAGCTCTTCCTCCTGCTTATTTAGAATTGAAATACCAGATT
TTACGTGAACCAATCTATGGTAAAGAAGAGGAGTACGATAAGAAGGAAGCGTGTTTGGAAGAGATTTATAAAACATACTT
TGATAATCTTCCTAAAGAAGAACAATTAGCATGTGAAGTATTGCAGGCGTGTTTGGATACTTCTAGAACTAGAAGGCCTG
AATATGCAGAGTTAATACTTGAGGAACATATGTCTCAGATCATAGAAAAAGAAGTTTATTCAACAAATGATATGTTGTTG
ATTCGTTTGTTTTTTTATCAAATGCTCATTAGAAAAGATCTTGCCAAATTTATAAATCAAATCGAAAAGCTAATGCTCTT
TCTTTTGGAACAGAAAAAGGTAACTAAATTAGAAAACTTCTTTATAATTAGAGATACTCTTATTTCAGGAATGTGTTGTC
TTGAAAAGGTAGGAGTAACTGATTGTTTTAATGATTATCTATCGTGTTTACAAGAAATTATGGATAAAACTCAAGATTAT
CAAAAGAAACCTCTTGTATTTATGTTTTTGTGGAAGCAAGCATTAAGAGAAGAAAGAGATTTTAGTTTAGCTGAATCATT
TTATCAGTCTTCTAAAACATTTGCGAAGCTAATTGGAGATGGATTTCTAGTAAAGAAATTGACAGAGGAATGGCAAGAGG
ATGTCAAAAAATATTTATAA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(70-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus suis P1/7

37.801

97.324

0.368
  comR Streptococcus suis 05ZYH33

37.801

97.324

0.368
  comR Streptococcus mutans UA159

37.415

98.328

0.368

Multiple sequence alignment