Detailed information    

insolico Bioinformatically predicted

Overview


Name   ciaH   Type   Regulator
Locus tag   H7795_RS04430 Genome accession   NZ_CP060641
Coordinates   863418..864728 (+) Length   436 a.a.
NCBI ID   WP_023612943.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY210     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context


Location: 858418..869728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7795_RS04415 (H7795_04410) phoU 859009..859662 (+) 654 WP_002984514.1 phosphate signaling complex protein PhoU -
  H7795_RS04420 (H7795_04415) - 859867..862404 (+) 2538 WP_023612941.1 M1 family metallopeptidase -
  H7795_RS04425 (H7795_04420) ciaR 862751..863425 (+) 675 WP_002984519.1 response regulator transcription factor Regulator
  H7795_RS04430 (H7795_04425) ciaH 863418..864728 (+) 1311 WP_023612943.1 sensor histidine kinase Regulator
  H7795_RS04435 (H7795_04430) rpsT 864853..865101 (-) 249 WP_009881183.1 30S ribosomal protein S20 -
  H7795_RS04440 (H7795_04435) coaA 865155..866075 (-) 921 WP_023612940.1 type I pantothenate kinase -
  H7795_RS04445 (H7795_04440) - 866343..866936 (+) 594 WP_010922352.1 class I SAM-dependent methyltransferase -
  H7795_RS04450 (H7795_04445) - 867589..867978 (+) 390 WP_002984531.1 cytidine deaminase -
  H7795_RS04455 (H7795_04450) - 868072..869124 (+) 1053 WP_002989701.1 BMP family protein -

Sequence


Protein


Download         Length: 436 a.a.        Molecular weight: 50114.63 Da        Isoelectric Point: 9.2692

>NTDB_id=477103 H7795_RS04430 WP_023612943.1 863418..864728(+) (ciaH) [Streptococcus pyogenes strain TSPY210]
MNKLKKEILSDNYNHFFHFFAVFTGIFVIMTIIILQIMRFGVYSSVDSSLVSVSNNASSYANRTMARISSFYFDTENNII
KALPDSDSSKLLGTPAANTDIILFSANGTILNAFDAFSNYQNFHLDKRRLGSIETTSLMNFYGQEEKYHTITVRVHIKNY
PAVAYMMAVVNVEQLDRANERYERIIIIVMSVFWLISILASIYLAKWSRKPILESYEKQKMFVENASHELRTPLAVLQNR
LESLFRKPNETILENSEHLASSLDEVRNMRILTTNLLNLTRRDDGINPQWTHLDTDFFNAIFENYELVAKEYGKIFYFQN
QVNRSLRMDKALLKQLITILFDNAIKYTDKNGIIEIIAKTTDKNLLISVIDNGPGITDEEKKKIFDRFYRVDKARTRQTG
GFGLGLALAQQIVMSLKGNITVKDNDPKGSIFEVKL

Nucleotide


Download         Length: 1311 bp        

>NTDB_id=477103 H7795_RS04430 WP_023612943.1 863418..864728(+) (ciaH) [Streptococcus pyogenes strain TSPY210]
ATGAATAAATTAAAAAAAGAGATTTTATCAGATAACTATAACCACTTTTTTCATTTTTTTGCGGTTTTTACAGGTATTTT
TGTCATTATGACTATTATTATCTTACAGATTATGCGGTTTGGCGTTTATTCGTCAGTTGATAGTAGTTTAGTTTCTGTTA
GTAATAATGCAAGTAGCTATGCTAATCGTACGATGGCTAGAATATCTTCTTTTTACTTTGATACTGAAAATAACATTATT
AAGGCGCTGCCTGATTCAGATAGTTCTAAGTTATTAGGAACGCCTGCAGCTAATACAGATATCATTTTGTTTAGTGCTAA
TGGAACAATTTTAAATGCTTTTGATGCGTTTTCTAACTATCAAAATTTTCATTTAGATAAACGCCGGTTGGGGAGTATTG
AAACCACCAGTTTAATGAATTTTTATGGACAAGAAGAAAAATACCATACGATAACTGTAAGGGTTCATATCAAAAATTAT
CCTGCAGTTGCCTATATGATGGCAGTAGTAAATGTGGAACAATTAGACCGCGCTAATGAACGTTACGAGCGTATTATTAT
TATAGTTATGAGTGTTTTTTGGCTAATTTCTATTTTAGCAAGTATTTATTTAGCCAAGTGGAGCAGAAAACCTATTTTAG
AAAGCTATGAAAAACAAAAAATGTTTGTTGAAAATGCTAGTCATGAACTAAGGACCCCTTTGGCAGTCTTACAGAATCGT
CTGGAATCGCTTTTTCGTAAGCCCAACGAAACGATATTAGAAAATAGTGAGCATCTCGCTTCTAGTTTAGACGAGGTTCG
CAACATGCGCATCTTAACAACCAATTTATTAAATTTAACAAGACGAGATGATGGCATTAATCCACAGTGGACTCATTTAG
ATACAGATTTTTTTAATGCTATTTTTGAGAATTATGAACTAGTTGCTAAAGAATATGGAAAAATATTTTATTTTCAGAAC
CAAGTCAATAGATCGTTAAGAATGGATAAGGCTTTACTAAAACAATTAATAACGATTTTATTTGACAATGCTATTAAATA
TACAGATAAAAATGGTATTATTGAAATTATAGCGAAAACAACGGACAAAAATTTATTAATTTCTGTTATTGATAATGGTC
CAGGGATAACAGATGAAGAAAAGAAAAAGATTTTTGATCGTTTTTATCGAGTTGACAAAGCTAGAACACGGCAAACAGGT
GGATTTGGCTTGGGGTTGGCTTTAGCTCAGCAAATCGTGATGTCTTTAAAAGGAAATATTACAGTAAAGGATAATGATCC
TAAAGGTAGTATTTTTGAAGTCAAACTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

57.437

100

0.576

  ciaH Streptococcus pneumoniae Rx1

51.142

100

0.514

  ciaH Streptococcus pneumoniae D39

51.142

100

0.514

  ciaH Streptococcus pneumoniae R6

51.142

100

0.514

  ciaH Streptococcus pneumoniae TIGR4

51.142

100

0.514