Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   JZY07_RS08870 Genome accession   NZ_CP071305
Coordinates   1788222..1788866 (+) Length   214 a.a.
NCBI ID   WP_024412175.1    Uniprot ID   -
Organism   Streptococcus suis strain SC183     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1783222..1793866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZY07_RS08845 (JZY07_08845) - 1783881..1785218 (-) 1338 WP_002942867.1 hemolysin family protein -
  JZY07_RS08850 (JZY07_08850) - 1785351..1786130 (+) 780 WP_024399664.1 ABC transporter ATP-binding protein -
  JZY07_RS08855 (JZY07_08855) - 1786146..1786700 (-) 555 WP_024396129.1 class I SAM-dependent methyltransferase -
  JZY07_RS08860 (JZY07_08860) - 1786710..1787228 (-) 519 WP_024399663.1 TetR/AcrR family transcriptional regulator -
  JZY07_RS08865 (JZY07_08865) - 1787350..1788168 (+) 819 WP_024399662.1 cation diffusion facilitator family transporter -
  JZY07_RS08870 (JZY07_08870) cclA/cilC 1788222..1788866 (+) 645 WP_024412175.1 A24 family peptidase Machinery gene
  JZY07_RS08875 (JZY07_08875) - 1788974..1790434 (+) 1461 WP_024399660.1 nicotinate phosphoribosyltransferase -
  JZY07_RS08880 (JZY07_08880) nadE 1790447..1791271 (+) 825 WP_024399659.1 ammonia-dependent NAD(+) synthetase -
  JZY07_RS08885 (JZY07_08885) - 1792145..1792672 (-) 528 WP_024399658.1 VanZ family protein -
  JZY07_RS08890 (JZY07_08890) rlmN 1792669..1793781 (-) 1113 WP_024399657.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24195.17 Da        Isoelectric Point: 8.4760

>NTDB_id=476711 JZY07_RS08870 WP_024412175.1 1788222..1788866(+) (cclA/cilC) [Streptococcus suis strain SC183]
MKTIILFFLGASIGSFLGLVIDRFPEQSIIAPSSHCNTCKRRLKAWDLIPILSQLSTKSKCRYCKAKIPYWYLGLEFLAG
LVVLVCHFQVLNLTETILSLAGLVLTIYDIKHQEYPFAVWLVFTFTALVLSQLNWLFCGFLLLAYLTEKWQVNIGSGDFL
YLASLALICGFTELLWIIQISSLLGLLVFTIFKPKSIPYVPLLFISSIPIILCT

Nucleotide


Download         Length: 645 bp        

>NTDB_id=476711 JZY07_RS08870 WP_024412175.1 1788222..1788866(+) (cclA/cilC) [Streptococcus suis strain SC183]
ATGAAAACAATTATCCTATTTTTCCTTGGAGCTTCTATCGGCTCCTTCTTGGGATTGGTCATCGACCGTTTCCCTGAACA
GTCCATTATCGCCCCCTCTAGTCACTGTAATACCTGCAAGCGACGGCTCAAAGCCTGGGACCTCATTCCAATCCTGTCCC
AGCTTTCGACAAAATCCAAATGCCGTTACTGCAAGGCGAAGATACCTTATTGGTATCTGGGACTAGAATTCTTAGCTGGT
CTAGTTGTCCTGGTCTGCCATTTTCAAGTCCTAAACCTAACCGAAACCATTCTCAGCTTGGCAGGGCTAGTTTTAACCAT
TTACGACATCAAGCATCAGGAATATCCTTTTGCTGTCTGGCTCGTTTTTACTTTTACAGCTCTGGTACTCTCCCAGCTCA
ACTGGCTTTTCTGTGGCTTTTTACTCTTGGCCTATCTGACTGAAAAATGGCAAGTCAATATTGGTTCTGGTGACTTTCTC
TATCTGGCAAGTTTAGCCTTAATATGTGGATTTACAGAACTCCTCTGGATTATCCAGATTAGTTCCCTCCTAGGGCTTCT
TGTCTTCACTATTTTCAAACCCAAGTCTATTCCCTACGTACCACTCCTTTTCATTTCAAGTATTCCTATCATTCTGTGCA
CCTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

48.113

99.065

0.477
  cclA/cilC Streptococcus pneumoniae Rx1

47.087

96.262

0.453
  cclA/cilC Streptococcus pneumoniae D39

47.087

96.262

0.453
  cclA/cilC Streptococcus pneumoniae R6

47.087

96.262

0.453
  cclA/cilC Streptococcus pneumoniae TIGR4

45.283

99.065

0.449
  cclA/cilC Streptococcus mitis NCTC 12261

44.34

99.065

0.439