Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | H9M95_RS12560 | Genome accession | NZ_CP060584 |
| Coordinates | 2512835..2513338 (-) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain WH52 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2492409..2517401 | 2512835..2513338 | within | 0 |
Gene organization within MGE regions
Location: 2492409..2517401
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H9M95_RS12400 (H9M95_12405) | - | 2492409..2492660 (-) | 252 | WP_000466748.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| H9M95_RS12405 (H9M95_12410) | - | 2492960..2493223 (+) | 264 | WP_001055897.1 | helix-turn-helix domain-containing protein | - |
| H9M95_RS12410 (H9M95_12415) | - | 2493361..2493933 (-) | 573 | WP_000769720.1 | PepSY domain-containing protein | - |
| H9M95_RS12415 (H9M95_12420) | - | 2494114..2494482 (-) | 369 | WP_000849177.1 | YxeA family protein | - |
| H9M95_RS12420 (H9M95_12425) | selX | 2494851..2495462 (-) | 612 | WP_050969548.1 | staphylococcal enterotoxin-like toxin X | - |
| H9M95_RS12425 (H9M95_12430) | - | 2495668..2496369 (+) | 702 | Protein_2400 | tyrosine-type recombinase/integrase | - |
| H9M95_RS12430 (H9M95_12435) | - | 2496408..2497346 (+) | 939 | WP_001822249.1 | Abi family protein | - |
| H9M95_RS12435 (H9M95_12440) | - | 2497886..2498329 (-) | 444 | WP_000022885.1 | GNAT family N-acetyltransferase | - |
| H9M95_RS12440 (H9M95_12445) | - | 2498448..2498774 (-) | 327 | WP_000679756.1 | DUF1433 domain-containing protein | - |
| H9M95_RS12445 (H9M95_12450) | - | 2498867..2500078 (+) | 1212 | WP_009558370.1 | hypothetical protein | - |
| H9M95_RS12450 (H9M95_12455) | - | 2500080..2500469 (+) | 390 | WP_000362902.1 | hypothetical protein | - |
| H9M95_RS12455 (H9M95_12460) | - | 2500586..2500945 (+) | 360 | WP_000935290.1 | hypothetical protein | - |
| H9M95_RS12460 (H9M95_12465) | - | 2501020..2501589 (-) | 570 | WP_194251021.1 | terminase small subunit | - |
| H9M95_RS12465 (H9M95_12470) | - | 2501586..2501798 (-) | 213 | WP_078065371.1 | pathogenicity island family protein | - |
| H9M95_RS12470 (H9M95_12475) | - | 2501930..2502457 (-) | 528 | WP_000771356.1 | spore coat protein | - |
| H9M95_RS12475 (H9M95_12480) | - | 2502508..2502726 (-) | 219 | WP_000448775.1 | capsid morphogenesis B protein | - |
| H9M95_RS12480 (H9M95_12485) | - | 2502744..2503322 (-) | 579 | WP_000846292.1 | hypothetical protein | - |
| H9M95_RS12485 (H9M95_12490) | - | 2503334..2503675 (-) | 342 | WP_001161659.1 | hypothetical protein | - |
| H9M95_RS12490 (H9M95_12495) | - | 2504022..2504663 (-) | 642 | WP_194251023.1 | pathogenicity island protein | - |
| H9M95_RS12495 (H9M95_12500) | - | 2504665..2504937 (-) | 273 | WP_001149389.1 | hypothetical protein | - |
| H9M95_RS12500 (H9M95_12505) | - | 2504924..2505727 (-) | 804 | WP_000148372.1 | bifunctional DNA primase/polymerase | - |
| H9M95_RS12505 (H9M95_12510) | - | 2505903..2507519 (-) | 1617 | WP_000343527.1 | hypothetical protein | - |
| H9M95_RS12510 (H9M95_12515) | tscT | 2507594..2507893 (-) | 300 | WP_193624960.1 | type II toxin-antitoxin system toxin TscT | - |
| H9M95_RS12515 (H9M95_12520) | - | 2507894..2508277 (-) | 384 | WP_194251024.1 | pathogenicity island protein | - |
| H9M95_RS12520 (H9M95_12525) | - | 2508237..2508482 (-) | 246 | WP_001171847.1 | hypothetical protein | - |
| H9M95_RS12525 (H9M95_12530) | - | 2508467..2508622 (-) | 156 | WP_000784886.1 | hypothetical protein | - |
| H9M95_RS12530 (H9M95_12535) | - | 2508634..2508906 (-) | 273 | WP_001138300.1 | helix-turn-helix domain-containing protein | - |
| H9M95_RS12535 (H9M95_12540) | - | 2508907..2509119 (-) | 213 | WP_001245562.1 | helix-turn-helix domain-containing protein | - |
| H9M95_RS12540 (H9M95_12545) | - | 2509291..2510016 (+) | 726 | WP_000668215.1 | helix-turn-helix domain-containing protein | - |
| H9M95_RS12545 (H9M95_12550) | - | 2510277..2511491 (+) | 1215 | WP_193624958.1 | tyrosine-type recombinase/integrase | - |
| H9M95_RS12550 (H9M95_12555) | - | 2511527..2512312 (+) | 786 | WP_228115634.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| H9M95_RS12555 (H9M95_12560) | rpsR | 2512541..2512783 (-) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| H9M95_RS12560 (H9M95_12565) | ssbA | 2512835..2513338 (-) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| H9M95_RS12565 (H9M95_12570) | rpsF | 2513359..2513655 (-) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| H9M95_RS12570 (H9M95_12575) | - | 2513899..2514090 (+) | 192 | WP_001052483.1 | hypothetical protein | - |
| H9M95_RS12575 (H9M95_12580) | ychF | 2514176..2515273 (-) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| H9M95_RS12580 (H9M95_12585) | - | 2515285..2515488 (-) | 204 | WP_000157345.1 | DUF951 domain-containing protein | - |
| H9M95_RS12585 (H9M95_12590) | - | 2515518..2516399 (-) | 882 | WP_001077602.1 | mechanosensitive ion channel family protein | - |
| H9M95_RS12590 (H9M95_12595) | - | 2516556..2517401 (-) | 846 | WP_001550052.1 | ParB/RepB/Spo0J family partition protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=476706 H9M95_RS12560 WP_000934799.1 2512835..2513338(-) (ssbA) [Staphylococcus aureus strain WH52]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=476706 H9M95_RS12560 WP_000934799.1 2512835..2513338(-) (ssbA) [Staphylococcus aureus strain WH52]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |