Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H7V21_RS09750 Genome accession   NZ_CP060494
Coordinates   1969700..1970224 (+) Length   174 a.a.
NCBI ID   WP_188053430.1    Uniprot ID   -
Organism   Sphingosinithalassobacter sp. CS137     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1964700..1975224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7V21_RS09725 - 1964719..1965792 (-) 1074 WP_188053420.1 alkene reductase -
  H7V21_RS09730 - 1965848..1966795 (+) 948 WP_188053422.1 DMT family transporter -
  H7V21_RS09735 - 1966809..1967474 (+) 666 WP_188053424.1 COQ9 family protein -
  H7V21_RS09740 - 1967554..1967826 (+) 273 WP_188053426.1 FeoA family protein -
  H7V21_RS09745 feoB 1967831..1969684 (+) 1854 WP_188053428.1 ferrous iron transporter B -
  H7V21_RS09750 ssb 1969700..1970224 (+) 525 WP_188053430.1 single-stranded DNA-binding protein Machinery gene
  H7V21_RS09755 - 1970297..1971103 (+) 807 WP_188053432.1 DUF1206 domain-containing protein -
  H7V21_RS09760 - 1971124..1971984 (-) 861 WP_188053434.1 pirin family protein -
  H7V21_RS09765 metW 1971981..1972586 (-) 606 WP_188053436.1 methionine biosynthesis protein MetW -
  H7V21_RS09770 - 1972586..1973707 (-) 1122 WP_188056471.1 homoserine O-acetyltransferase MetX -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18319.82 Da        Isoelectric Point: 5.0093

>NTDB_id=476344 H7V21_RS09750 WP_188053430.1 1969700..1970224(+) (ssb) [Sphingosinithalassobacter sp. CS137]
MSGSVNKVILVGNLGRDPESRTFQNGGKVVNLRIATSENWKDRNTGERREKTEWHSVAIFNEGLANVAERYLRKGSKVYI
EGQLQTRKWQDQSGNDRYSTEVVLQGFNSVLTMLDSPGGGQGGGGGARGGGDWGGGGDDFAGQSSSRGGGFGGGGGSRGG
GSDFPDDLDDDVPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=476344 H7V21_RS09750 WP_188053430.1 1969700..1970224(+) (ssb) [Sphingosinithalassobacter sp. CS137]
ATGTCGGGTTCGGTGAACAAGGTGATCCTGGTCGGCAATCTGGGCCGCGATCCGGAGAGCCGGACGTTCCAGAACGGCGG
CAAGGTGGTCAATCTGCGCATCGCGACCAGCGAGAACTGGAAGGATCGCAACACCGGCGAGCGGCGCGAGAAGACCGAAT
GGCATTCGGTCGCGATCTTCAACGAGGGGCTCGCCAACGTCGCCGAACGCTATCTGCGCAAGGGCAGCAAGGTCTATATC
GAGGGCCAGCTCCAGACCCGGAAGTGGCAGGACCAGTCGGGCAACGACCGCTATTCGACCGAAGTGGTGCTGCAGGGCTT
CAACTCGGTGCTGACGATGCTCGATTCGCCGGGTGGCGGGCAGGGCGGCGGTGGCGGCGCGCGCGGCGGTGGCGACTGGG
GCGGCGGCGGTGACGATTTCGCCGGCCAGTCCTCGAGCCGCGGCGGCGGCTTCGGCGGTGGCGGCGGGTCGCGCGGCGGC
GGCAGCGACTTCCCCGACGACCTGGACGACGACGTCCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.542

100

0.534
  ssb Glaesserella parasuis strain SC1401

49.198

100

0.529
  ssb Neisseria meningitidis MC58

37.363

100

0.391
  ssb Neisseria gonorrhoeae MS11

37.363

100

0.391