Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   JYA73_RS07205 Genome accession   NZ_CP071104
Coordinates   1532921..1533895 (-) Length   324 a.a.
NCBI ID   WP_000697220.1    Uniprot ID   -
Organism   Staphylococcus aureus strain PS/BAC/317/16/W     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1527921..1538895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYA73_RS07165 (JYA73_001435) gcvT 1528422..1529513 (-) 1092 WP_000093347.1 glycine cleavage system aminomethyltransferase GcvT -
  JYA73_RS07170 (JYA73_001436) - 1529672..1530196 (-) 525 WP_001015125.1 shikimate kinase -
  JYA73_RS07175 (JYA73_001437) - 1530186..1530332 (-) 147 WP_001789879.1 hypothetical protein -
  JYA73_RS07180 (JYA73_001438) comGF 1530429..1530926 (-) 498 WP_211021799.1 competence type IV pilus minor pilin ComGF Machinery gene
  JYA73_RS07185 (JYA73_001439) comGE 1530844..1531143 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  JYA73_RS07190 (JYA73_001440) comGD 1531130..1531576 (-) 447 WP_001791207.1 competence type IV pilus minor pilin ComGD Machinery gene
  JYA73_RS07195 (JYA73_001441) comGC 1531554..1531865 (-) 312 WP_000472257.1 competence type IV pilus major pilin ComGC Machinery gene
  JYA73_RS07200 (JYA73_001442) comGB 1531879..1532949 (-) 1071 WP_000776412.1 competence type IV pilus assembly protein ComGB Machinery gene
  JYA73_RS07205 (JYA73_001443) comGA 1532921..1533895 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  JYA73_RS07210 (JYA73_001444) - 1533920..1535567 (-) 1648 Protein_1425 IS1182 family transposase -
  JYA73_RS07215 (JYA73_001445) - 1535862..1536485 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  JYA73_RS07220 (JYA73_001446) - 1536482..1536811 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  JYA73_RS07225 (JYA73_001447) - 1536811..1537797 (-) 987 WP_000161314.1 ROK family glucokinase -
  JYA73_RS07230 (JYA73_001448) - 1537794..1537997 (-) 204 WP_000078677.1 YqgQ family protein -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36897.96 Da        Isoelectric Point: 8.8516

>NTDB_id=476288 JYA73_RS07205 WP_000697220.1 1532921..1533895(-) (comGA) [Staphylococcus aureus strain PS/BAC/317/16/W]
MKILFQEIINKAIEMKASDVHFIPVKNEVSIKFRINDNLEQYEQIGNSIYQKLLVYMKFQAGLDVSTQQVAQSGRYSYHF
NKIYFLRISTLPLSLGQESCVIRIVPQFFQQQKSTYKFNDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVSYANKALNLN
VISIEDPVEMQIPGIVQINVNDKAGINYVNSFKAILRCDPDVILIGEIRDKDVAKCVIQASLSGHLVLTTLHATDCKGAI
LRLLEMGISVQELIQATNLIINQRLVTTIKQQRQLVCEILSQQQLRYFFSHNHSLPSSFKNLEDKLDDMTKAGVICETTM
DKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=476288 JYA73_RS07205 WP_000697220.1 1532921..1533895(-) (comGA) [Staphylococcus aureus strain PS/BAC/317/16/W]
TTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACATTTTATTCCAGTTAAAAA
TGAAGTAAGTATTAAATTTAGAATTAATGATAACTTGGAGCAGTATGAACAAATTGGGAATAGCATTTATCAAAAGTTAT
TAGTTTATATGAAGTTTCAAGCTGGGCTTGATGTTTCTACACAGCAAGTCGCACAGAGCGGTCGATATAGTTACCATTTC
AATAAAATATATTTTTTGAGAATATCAACTTTACCATTGTCACTTGGCCAAGAAAGTTGTGTTATCAGAATTGTACCTCA
ATTTTTTCAACAACAGAAATCAACTTATAAATTCAATGATTTTAAACACCTCATGAATAAGAAACAAGGATTACTATTGT
TTAGTGGGCCAACTGGTTCAGGAAAGAGTACATTAATGTATCAAATGGTCTCATACGCGAATAAAGCCTTGAATTTAAAT
GTAATTTCTATAGAGGATCCTGTAGAGATGCAAATTCCTGGTATCGTGCAAATTAATGTGAATGATAAAGCTGGCATTAA
CTATGTAAATTCGTTTAAAGCTATTTTAAGATGTGATCCTGATGTTATTTTAATAGGTGAAATCAGAGATAAAGATGTTG
CCAAGTGTGTTATACAGGCTAGTTTAAGTGGTCACCTTGTTCTGACTACATTGCATGCAACTGATTGTAAAGGTGCTATT
TTAAGGCTATTAGAAATGGGCATTTCTGTACAAGAATTGATACAGGCAACTAACTTAATTATAAACCAACGACTTGTAAC
TACTATTAAGCAACAGCGACAATTAGTATGCGAAATTCTATCTCAGCAACAACTCCGATATTTCTTTTCCCATAATCATT
CATTACCATCATCATTTAAGAACTTAGAAGATAAACTTGATGATATGACAAAAGCAGGTGTCATTTGTGAAACTACAATG
GATAAATACATTTAA

Domains

Predicted by InterProScan.

Type II/IV secretion system protein (T2SSE)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

100

100

1
  comGA Staphylococcus aureus N315

100

100

1