Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   LCGL_RS12425 Genome accession   NC_017490
Coordinates   497897..498901 (+) Length   334 a.a.
NCBI ID   WP_014024382.1    Uniprot ID   F9VC93
Organism   Lactococcus garvieae Lg2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 492897..503901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCGL_RS12405 (LCGL_0480) - 493284..493988 (+) 705 WP_014024378.1 Bax inhibitor-1/YccA family protein -
  LCGL_RS12410 (LCGL_0481) - 494041..494865 (-) 825 WP_014024379.1 Cof-type HAD-IIB family hydrolase -
  LCGL_RS12415 (LCGL_0482) - 495222..496643 (+) 1422 WP_014024380.1 NCS2 family permease -
  LCGL_RS12420 (LCGL_0483) - 496720..497820 (+) 1101 WP_014024381.1 YdcF family protein -
  LCGL_RS12425 (LCGL_0484) coiA 497897..498901 (+) 1005 WP_014024382.1 competence protein CoiA Machinery gene
  LCGL_RS12430 (LCGL_0485) pepF 498885..500690 (+) 1806 WP_014024383.1 oligoendopeptidase F Regulator
  LCGL_RS12435 (LCGL_0486) - 500690..501373 (+) 684 WP_014024384.1 O-methyltransferase -
  LCGL_RS12440 (LCGL_0487) - 501471..502379 (+) 909 WP_014024385.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 39893.82 Da        Isoelectric Point: 8.6103

>NTDB_id=47622 LCGL_RS12425 WP_014024382.1 497897..498901(+) (coiA) [Lactococcus garvieae Lg2]
MLIALDKDGKTINLLDSTSINGPFYCPACKTPLRLKKGKIKIPHFAHVSLQNCDSWSENESAQHLGLKLSLYQWFKEKEK
VELEKYVPEIKQTADLLVNDKLAIEIQCSPLSLQRLEERTVSYKEMGYYVLWLQGRDLWLKNTLSPLQKNLLYYSAERGF
YFWELDWKRKKLRLKSLIYQDLKGRPIYLTEEFDFFQESLLDLLRQPFRKGKNLSLDVPKQEELQLFVQKQLYYQVPKWL
KVQEKYYEQGRNVLDLNWKKSYWSPPGLNLLTFDFADDTRESFFQVDISLEKYYHSFYESFQLQEHETLHTPSFYAIIKD
KNKVENGEWNGKKT

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=47622 LCGL_RS12425 WP_014024382.1 497897..498901(+) (coiA) [Lactococcus garvieae Lg2]
ATGTTAATAGCTTTGGATAAAGACGGAAAAACAATTAATCTTCTTGACAGCACTTCAATTAATGGCCCTTTTTATTGTCC
CGCCTGTAAGACGCCCCTTCGTTTAAAAAAAGGGAAGATAAAAATTCCTCACTTTGCCCATGTATCCTTACAAAATTGTG
ACTCTTGGAGTGAAAATGAATCTGCACAACACTTGGGCTTAAAACTCAGCTTATATCAGTGGTTTAAGGAAAAAGAGAAA
GTAGAGCTGGAAAAGTACGTGCCAGAGATTAAGCAAACGGCTGATTTGTTAGTGAATGATAAACTTGCTATTGAAATACA
GTGCTCGCCCCTCTCTTTGCAACGTTTAGAAGAGAGAACGGTCAGTTACAAAGAAATGGGGTATTATGTACTTTGGCTTC
AAGGGAGGGACTTGTGGCTTAAAAATACTCTATCTCCTTTGCAGAAAAATTTGCTTTATTATTCAGCAGAGAGAGGTTTT
TATTTTTGGGAATTGGACTGGAAAAGAAAGAAACTACGTTTGAAATCATTGATTTATCAAGATTTGAAAGGACGACCGAT
TTATCTAACGGAAGAGTTTGACTTCTTTCAAGAAAGTCTCCTAGACCTCTTACGTCAGCCCTTTCGAAAAGGAAAAAATC
TGAGTTTAGATGTGCCAAAGCAAGAAGAGTTACAGTTGTTTGTTCAGAAACAATTGTATTATCAAGTGCCAAAATGGCTT
AAAGTGCAAGAAAAATATTATGAACAAGGAAGAAATGTGCTGGACCTTAACTGGAAGAAGAGTTACTGGAGTCCTCCGGG
CTTGAACTTGTTGACCTTTGACTTTGCCGATGATACGCGAGAAAGCTTTTTTCAAGTAGACATTTCCTTGGAAAAATATT
ACCACAGTTTCTACGAAAGTTTTCAGTTACAAGAACATGAAACACTGCATACACCAAGCTTCTATGCTATAATTAAAGAT
AAAAATAAAGTGGAAAACGGAGAATGGAATGGCAAAAAAACGTGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9VC93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

51.534

97.605

0.503
  coiA Streptococcus pneumoniae Rx1

41.463

98.204

0.407
  coiA Streptococcus pneumoniae D39

41.463

98.204

0.407
  coiA Streptococcus pneumoniae R6

41.463

98.204

0.407
  coiA Streptococcus pneumoniae TIGR4

41.159

98.204

0.404
  coiA Streptococcus mitis NCTC 12261

40.549

98.204

0.398

Multiple sequence alignment