Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PSAL_RS03600 Genome accession   NZ_CP060436
Coordinates   741902..742432 (-) Length   176 a.a.
NCBI ID   WP_119839922.1    Uniprot ID   -
Organism   Pseudooceanicola algae strain Lw-13e     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 736902..747432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSAL_RS03580 (PSAL_007090) - 738206..738490 (+) 285 WP_119840226.1 DUF1330 domain-containing protein -
  PSAL_RS03585 (PSAL_007100) - 738490..738777 (+) 288 WP_119839919.1 DUF1330 domain-containing protein -
  PSAL_RS03590 (PSAL_007110) typA 738904..740724 (-) 1821 WP_119839920.1 translational GTPase TypA -
  PSAL_RS03595 (PSAL_007120) - 740794..741621 (-) 828 WP_119839921.1 GNAT family N-acetyltransferase -
  PSAL_RS03600 (PSAL_007140) ssb 741902..742432 (-) 531 WP_119839922.1 single-stranded DNA-binding protein Machinery gene
  PSAL_RS03605 (PSAL_007150) - 742676..743272 (+) 597 WP_119840227.1 lytic transglycosylase domain-containing protein -
  PSAL_RS03610 (PSAL_007160) - 743306..745384 (-) 2079 WP_119839923.1 ABC transporter ATP-binding protein -
  PSAL_RS03615 (PSAL_007170) - 745487..746683 (-) 1197 WP_119839924.1 ABC transporter permease -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18736.35 Da        Isoelectric Point: 5.3681

>NTDB_id=476154 PSAL_RS03600 WP_119839922.1 741902..742432(-) (ssb) [Pseudooceanicola algae strain Lw-13e]
MAGSVNKVILIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDRNSGERKERTEWHSVAIFSEPLVRVAEQYLRKGSKVYI
EGQLETRKWQDQSGQDKYSTEVVLRPFRSELTMLDGRNEGGGGGGGSYGGGSSSGGGYDDRGGYDDRGGYGGGSSGGGSS
SGGGAPSRDIDDEIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=476154 PSAL_RS03600 WP_119839922.1 741902..742432(-) (ssb) [Pseudooceanicola algae strain Lw-13e]
ATGGCCGGATCCGTCAACAAGGTCATCCTGATCGGCAACCTGGGTCGCGACCCGGAAGTCCGCTCGTTCCAGAATGGTGG
CAAGGTCTGCAACCTGCGCATCGCCACGTCGGAAACCTGGAAAGACCGTAATTCCGGTGAGCGCAAGGAACGCACCGAAT
GGCACTCGGTCGCCATTTTCTCGGAGCCGCTGGTCCGGGTGGCAGAGCAATACCTGCGCAAAGGGTCGAAGGTCTATATC
GAAGGCCAGCTGGAAACCCGCAAATGGCAGGACCAATCGGGTCAGGACAAGTATTCCACCGAAGTCGTGCTGCGTCCCTT
CCGGTCGGAACTGACCATGCTCGACGGTCGCAATGAAGGCGGCGGCGGTGGCGGCGGCTCCTACGGCGGCGGCTCGTCCT
CGGGCGGCGGATACGATGATCGCGGCGGATACGACGACCGTGGCGGCTATGGCGGTGGGTCTTCCGGTGGCGGCAGTTCA
TCGGGTGGCGGCGCGCCGAGCCGGGATATAGACGACGAAATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.711

98.295

0.489
  ssb Glaesserella parasuis strain SC1401

45.699

100

0.483
  ssb Neisseria gonorrhoeae MS11

43.017

100

0.438
  ssb Neisseria meningitidis MC58

43.017

100

0.438