Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CVCAS_RS11320 | Genome accession | NC_017486 |
| Coordinates | 2262287..2262787 (-) | Length | 166 a.a. |
| NCBI ID | WP_003131953.1 | Uniprot ID | - |
| Organism | Lactococcus lactis subsp. lactis CV56 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2257287..2267787
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CVCAS_RS11295 (CVCAS_2213) | gnd | 2258351..2259256 (-) | 906 | WP_032398514.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| CVCAS_RS11300 (CVCAS_2214) | - | 2259620..2260468 (+) | 849 | WP_003131770.1 | MurR/RpiR family transcriptional regulator | - |
| CVCAS_RS11305 (CVCAS_2215) | - | 2260506..2260814 (+) | 309 | WP_014570833.1 | DUF960 domain-containing protein | - |
| CVCAS_RS11310 (CVCAS_2216) | - | 2260896..2261669 (-) | 774 | WP_003131951.1 | metallophosphoesterase | - |
| CVCAS_RS11315 (CVCAS_2217) | rpsR | 2261869..2262114 (-) | 246 | WP_003131952.1 | 30S ribosomal protein S18 | - |
| CVCAS_RS11320 (CVCAS_2218) | ssb | 2262287..2262787 (-) | 501 | WP_003131953.1 | single-stranded DNA-binding protein | Machinery gene |
| CVCAS_RS11325 (CVCAS_2219) | rpsF | 2262817..2263110 (-) | 294 | WP_003131954.1 | 30S ribosomal protein S6 | - |
| CVCAS_RS11330 (CVCAS_2220) | - | 2263302..2264156 (-) | 855 | WP_003131955.1 | undecaprenyl-diphosphate phosphatase | - |
| CVCAS_RS11335 (CVCAS_2221) | - | 2264679..2266144 (+) | 1466 | Protein_2206 | amino acid permease | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18304.13 Da Isoelectric Point: 5.2279
>NTDB_id=47595 CVCAS_RS11320 WP_003131953.1 2262287..2262787(-) (ssb) [Lactococcus lactis subsp. lactis CV56]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF
Nucleotide
Download Length: 501 bp
>NTDB_id=47595 CVCAS_RS11320 WP_003131953.1 2262287..2262787(-) (ssb) [Lactococcus lactis subsp. lactis CV56]
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.465 |
100 |
0.627 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.803 |
100 |
0.602 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.855 |
0.373 |
| ssb | Glaesserella parasuis strain SC1401 |
35.028 |
100 |
0.373 |