Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   JHY03_RS14750 Genome accession   NZ_CP071044
Coordinates   3374703..3376124 (+) Length   473 a.a.
NCBI ID   WP_055561464.1    Uniprot ID   -
Organism   Streptomyces sp. CA-256286     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3369703..3381124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHY03_RS14730 (JHY03_29640) - 3369807..3370637 (-) 831 WP_031124040.1 sugar phosphate isomerase/epimerase -
  JHY03_RS14735 (JHY03_29650) - 3370746..3371696 (-) 951 WP_031124039.1 Ppx/GppA phosphatase family protein -
  JHY03_RS14740 (JHY03_29660) - 3371736..3372578 (+) 843 WP_207564324.1 hypothetical protein -
  JHY03_RS14745 (JHY03_29670) - 3372668..3374545 (-) 1878 WP_207564325.1 hypothetical protein -
  JHY03_RS14750 (JHY03_29680) radA/sms 3374703..3376124 (+) 1422 WP_055561464.1 DNA repair protein RadA Machinery gene
  JHY03_RS14755 (JHY03_29690) disA 3376206..3377330 (+) 1125 WP_031124035.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  JHY03_RS14760 (JHY03_29700) - 3377509..3378342 (-) 834 WP_233842058.1 hypothetical protein -
  JHY03_RS14765 (JHY03_29710) - 3378585..3379496 (+) 912 WP_031124033.1 A/G-specific adenine glycosylase -
  JHY03_RS14770 (JHY03_29720) - 3379652..3380377 (+) 726 WP_202705375.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 49893.07 Da        Isoelectric Point: 8.4953

>NTDB_id=475929 JHY03_RS14750 WP_055561464.1 3374703..3376124(+) (radA/sms) [Streptomyces sp. CA-256286]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAAVPIGQVDSRQATARSTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASEDHRTLYVTAEESASQVRMRADRIKAINDHLYLAAETDLSAV
LGHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDVAVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLTEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGRVPSGMKVTEVADMGDALRVLPRRSRQEAPQPRQEDNARR

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=475929 JHY03_RS14750 WP_055561464.1 3374703..3376124(+) (radA/sms) [Streptomyces sp. CA-256286]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGTACCGAATGCGGCTGGACCACCGCCAAATGGCT
CGGCCGTTGCCCCGAATGCCAGGCGTGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCCGCCGTGCGCACCACCGCGGCCG
GCCGGGTCTCCACCGCGGCCGTGCCGATCGGCCAGGTCGACAGCCGTCAGGCCACCGCGCGCTCGACCGGCGTCGGTGAG
CTGGACCGGGTGCTCGGCGGCGGGCTGGTGCCGGGGGCCGTCGTGCTGCTGGCGGGCGAGCCGGGCGTCGGCAAGTCCAC
GCTGCTGCTGGACGTGGCGGCCAAGGCGGCGAGCGAGGACCACCGCACGCTCTATGTGACCGCCGAGGAGTCCGCGAGCC
AGGTCCGGATGCGGGCCGACCGGATCAAGGCGATCAACGACCACCTCTACCTCGCGGCGGAGACCGACCTGTCGGCCGTG
CTCGGGCATCTGGACGCGGTGAAGCCGTCCCTGCTGATCCTGGACTCGGTACAGACCGTCGCCTCGCCCGAGATCGACGG
CGCGCCCGGCGGGATGGCCCAGGTCCGGGAGGTCGCCGGGGCGCTGATCCGGGCCTCCAAGGAGCGCGGGATGGCCACGC
TGCTCGTCGGCCATGTCACGAAGGACGGCGCGATCGCCGGGCCCCGGCTGCTGGAGCACCTGGTCGACGTGGTGCTCTCC
TTCGAGGGCGACCGCCACGCCCGGCTCCGCCTGGTCCGCGGCGTCAAGAACCGTTACGGGGCGACCGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGCATCACCGGGCTCGCCGACCCCTCGGGTCTCTTCCTGACCCGGCGCGACGTGGCGGTGC
CGGGCACCTGTCTGACGGTGACGCTGGAGGGCAAGCGGCCCCTGGTCGCCGAGGTGCAGGCGCTCACCGTCGACTCCCAG
ATCCCCTCGCCCCGGCGCACCACCTCCGGTCTGGAGACCTCCCGGGTCTCGATGATGCTCGCCGTGCTGGAGCAGCGCGG
ACGGATCAGCGCGCTGGGCAAGCGGGACATCTACAGCGCAACGGTCGGCGGTGTGAAGCTCACCGAGCCGGCCGCCGACC
TGGCCATCGCGCTCGCGCTGGCCAGTGCCGCCAGTGACACCCCGCTCCCGAAGAACCTGGTCGCGATCGGTGAGGTGGGG
CTCGCGGGCGAGGTCCGCAGGGTCACCGGAGTCCAGCGGAGACTGGCCGAGGCACACCGTCTCGGCTTCACCCACGCCTT
GGTACCGACCGACCCGGGGAGGGTTCCTTCGGGTATGAAGGTCACAGAAGTCGCCGACATGGGGGATGCTCTGCGGGTCC
TCCCGCGCCGGTCTCGGCAGGAGGCACCACAGCCTCGTCAGGAAGACAACGCGCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

AAA domain (AAA_25)

(85-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.488

95.772

0.416
  radA Streptococcus pneumoniae Rx1

42.605

95.772

0.408
  radA Streptococcus pneumoniae D39

42.605

95.772

0.408
  radA Streptococcus pneumoniae R6

42.605

95.772

0.408
  radA Streptococcus pneumoniae TIGR4

42.605

95.772

0.408
  radA Streptococcus mitis SK321

44.056

90.698

0.4
  radA Streptococcus mitis NCTC 12261

44.056

90.698

0.4