Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   H8S71_RS20325 Genome accession   NZ_CP060417
Coordinates   3987191..3987709 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis subsp. subtilis strain ONU 559     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3982191..3992709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8S71_RS20295 (H8S71_20290) yyaJ 3982694..3984049 (+) 1356 WP_049140536.1 MFS transporter -
  H8S71_RS20300 (H8S71_20295) maa 3984083..3984637 (-) 555 WP_033884396.1 sugar O-acetyltransferase -
  H8S71_RS20305 (H8S71_20300) yyaH 3984655..3985035 (-) 381 WP_161986508.1 VOC family protein -
  H8S71_RS20310 (H8S71_20305) ccpB 3985091..3986026 (-) 936 WP_101502646.1 transcriptional regulator CcpB -
  H8S71_RS20315 (H8S71_20310) xth 3986085..3986843 (-) 759 WP_169037559.1 exodeoxyribonuclease III -
  H8S71_RS20320 (H8S71_20315) rpsR 3986908..3987147 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  H8S71_RS20325 (H8S71_20320) ssbA 3987191..3987709 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  H8S71_RS20330 (H8S71_20325) rpsF 3987750..3988037 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  H8S71_RS20335 (H8S71_20330) ychF 3988148..3989248 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  H8S71_RS20340 (H8S71_20335) yyaE 3989375..3991378 (-) 2004 WP_032724957.1 molybdopterin-dependent oxidoreductase -
  H8S71_RS20345 (H8S71_20340) yyzM 3991429..3991635 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=475929 H8S71_RS20325 WP_003219228.1 3987191..3987709(-) (ssbA) [Bacillus subtilis subsp. subtilis strain ONU 559]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=475929 H8S71_RS20325 WP_003219228.1 3987191..3987709(-) (ssbA) [Bacillus subtilis subsp. subtilis strain ONU 559]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378