Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   H8F01_RS14770 Genome accession   NZ_CP060412
Coordinates   3373022..3373879 (-) Length   285 a.a.
NCBI ID   WP_187055846.1    Uniprot ID   A0A7G8Q0Q9
Organism   Dyella telluris strain G9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3368022..3378879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8F01_RS14745 (H8F01_14745) lgt 3369077..3369973 (+) 897 WP_187055841.1 prolipoprotein diacylglyceryl transferase -
  H8F01_RS14750 (H8F01_14750) - 3369977..3370771 (+) 795 WP_187055842.1 thymidylate synthase -
  H8F01_RS14755 (H8F01_14755) - 3370925..3371413 (+) 489 WP_187055843.1 dihydrofolate reductase -
  H8F01_RS14760 (H8F01_14760) - 3371451..3372380 (+) 930 WP_187055844.1 Nudix family hydrolase -
  H8F01_RS14765 (H8F01_14765) coaE 3372402..3373025 (-) 624 WP_238480998.1 dephospho-CoA kinase -
  H8F01_RS14770 (H8F01_14770) pilD 3373022..3373879 (-) 858 WP_187055846.1 A24 family peptidase Machinery gene
  H8F01_RS14775 (H8F01_14775) pilC 3373946..3375208 (-) 1263 WP_187055847.1 type II secretion system F family protein Machinery gene
  H8F01_RS14780 (H8F01_14780) pilB 3375367..3377088 (-) 1722 WP_187055848.1 type IV-A pilus assembly ATPase PilB Machinery gene
  H8F01_RS14785 (H8F01_14785) - 3377320..3378492 (+) 1173 WP_187055849.1 DegT/DnrJ/EryC1/StrS family aminotransferase -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 31113.51 Da        Isoelectric Point: 9.0861

>NTDB_id=475790 H8F01_RS14770 WP_187055846.1 3373022..3373879(-) (pilD) [Dyella telluris strain G9]
MLALPPWGWITAAGVLGLLVGSFLNVVILRLPARLMAQWRMDAFDTLAMEPDATALPPGIVREPSHCPHCKHPLTARDNI
PLFGWLLLGGRCRYCKAPISIQYPLVELLSGLASAVIVWKFGLNPVALAGLVFTWMLIALAGIDFRTQYLPDQLNYPLLW
LGLLLSLLPMFVLPGTAIVGAAIGYLSLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWMGPTALLPIILLSSLIGAIVGG
GLIALRKHGRDIPMPFGPFIAAAGWVWFVAGEWLLHQYMQMMGLK

Nucleotide


Download         Length: 858 bp        

>NTDB_id=475790 H8F01_RS14770 WP_187055846.1 3373022..3373879(-) (pilD) [Dyella telluris strain G9]
ATGCTTGCACTCCCCCCCTGGGGCTGGATCACGGCCGCCGGCGTCCTTGGCCTGCTGGTCGGCAGCTTCCTGAATGTGGT
GATCCTGCGCCTGCCGGCGCGCCTGATGGCGCAGTGGCGCATGGATGCGTTCGATACGCTGGCCATGGAGCCCGACGCCA
CGGCGTTGCCCCCCGGCATCGTGCGCGAGCCGTCCCACTGTCCTCACTGCAAGCATCCGCTGACGGCACGCGACAACATC
CCGTTGTTCGGCTGGCTGCTGCTGGGCGGGCGTTGTCGCTACTGCAAGGCGCCGATCTCCATCCAGTATCCGCTGGTGGA
ATTGCTGAGCGGACTGGCCAGCGCGGTGATCGTGTGGAAGTTCGGCCTCAATCCGGTCGCACTGGCCGGCCTGGTGTTCA
CCTGGATGCTCATCGCGCTGGCCGGCATCGATTTCCGCACGCAGTACCTGCCCGACCAACTCAATTACCCCTTGCTGTGG
TTGGGCCTGCTGCTCAGCCTGCTGCCGATGTTCGTGCTGCCCGGCACGGCGATCGTGGGTGCCGCTATCGGCTACCTGAG
CCTGTGGAGCGTGTACTGGCTGTTCAAGCTGCTCACCGGCAAGGAAGGCATGGGTTACGGCGACTTCAAGCTACTCGCCG
CACTGGGCGCATGGATGGGCCCCACGGCCTTGCTGCCGATCATCCTGCTTTCGTCGCTGATCGGTGCCATCGTGGGTGGT
GGCCTGATCGCGCTGCGCAAGCACGGCCGGGATATCCCCATGCCGTTCGGCCCCTTCATCGCCGCGGCCGGCTGGGTCTG
GTTCGTGGCCGGTGAATGGTTGTTGCACCAGTACATGCAAATGATGGGGCTGAAGTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(131-239)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(15-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G8Q0Q9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

50.719

97.544

0.495
  pilD Vibrio campbellii strain DS40M4

48.921

97.544

0.477
  pilD Acinetobacter nosocomialis M2

49.442

94.386

0.467
  pilD Acinetobacter baumannii D1279779

49.071

94.386

0.463
  pilD Neisseria gonorrhoeae MS11

44.322

95.789

0.425