Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   H8F01_RS14775 Genome accession   NZ_CP060412
Coordinates   3373946..3375208 (-) Length   420 a.a.
NCBI ID   WP_187055847.1    Uniprot ID   A0A7G8Q0R0
Organism   Dyella telluris strain G9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3368946..3380208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8F01_RS14745 (H8F01_14745) lgt 3369077..3369973 (+) 897 WP_187055841.1 prolipoprotein diacylglyceryl transferase -
  H8F01_RS14750 (H8F01_14750) - 3369977..3370771 (+) 795 WP_187055842.1 thymidylate synthase -
  H8F01_RS14755 (H8F01_14755) - 3370925..3371413 (+) 489 WP_187055843.1 dihydrofolate reductase -
  H8F01_RS14760 (H8F01_14760) - 3371451..3372380 (+) 930 WP_187055844.1 Nudix family hydrolase -
  H8F01_RS14765 (H8F01_14765) coaE 3372402..3373025 (-) 624 WP_238480998.1 dephospho-CoA kinase -
  H8F01_RS14770 (H8F01_14770) pilD 3373022..3373879 (-) 858 WP_187055846.1 A24 family peptidase Machinery gene
  H8F01_RS14775 (H8F01_14775) pilC 3373946..3375208 (-) 1263 WP_187055847.1 type II secretion system F family protein Machinery gene
  H8F01_RS14780 (H8F01_14780) pilB 3375367..3377088 (-) 1722 WP_187055848.1 type IV-A pilus assembly ATPase PilB Machinery gene
  H8F01_RS14785 (H8F01_14785) - 3377320..3378492 (+) 1173 WP_187055849.1 DegT/DnrJ/EryC1/StrS family aminotransferase -
  H8F01_RS14790 (H8F01_14790) - 3378614..3379468 (+) 855 WP_187055850.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45560.71 Da        Isoelectric Point: 10.0838

>NTDB_id=475791 H8F01_RS14775 WP_187055847.1 3373946..3375208(-) (pilC) [Dyella telluris strain G9]
MAAATAKNVKSIGAQRAEISKLTTYDWVALDKRGKRMKGDMAAKNASLVKAELRRQGMNPQTVKERGKPLFGASGSTVKP
RDVAIFSRQIATMMASGVPMVQAFEIIADGQKNIRFKNMLTDVKQTIEGGSALHEALGKYPVQFDELYRNLVHAGEASGV
LDSVLDTVATYKERTEAIKAKIKKALFYPVMVLAVALLVSMIMLLFVVPVFAQTFKDAGAELPAPTQVVISASEFMKSYW
WLVVGSIVGGIVALVMAKQRSVKFAHFLDRVMLKVPVIGNILRQSAIARFARTLGVTFRAGVPLVEAMDAVAGATGSVVY
GDAVKQMREDVAVGHQLQLSMRQTGLFPNMVVQMTAIGEESGALDHMLFKVAEFYEEEVNNAVDTLSTLLEPLIMVILGV
LVGGMVVSLYLPIFKLASTV

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=475791 H8F01_RS14775 WP_187055847.1 3373946..3375208(-) (pilC) [Dyella telluris strain G9]
ATGGCTGCGGCCACCGCTAAGAACGTGAAGTCGATCGGCGCCCAGCGCGCCGAGATCAGCAAGCTGACCACCTACGACTG
GGTGGCGCTGGACAAGCGCGGCAAGCGCATGAAGGGCGACATGGCGGCCAAGAACGCCTCGCTCGTCAAGGCCGAGCTGC
GCCGCCAGGGCATGAACCCGCAGACGGTGAAGGAACGGGGCAAGCCACTGTTCGGCGCCTCCGGCAGCACCGTCAAGCCG
CGCGACGTGGCCATCTTCAGCCGCCAGATCGCCACCATGATGGCCTCCGGTGTGCCGATGGTGCAGGCCTTCGAGATCAT
TGCCGACGGCCAGAAGAACATCCGCTTCAAGAACATGCTCACCGACGTGAAGCAGACCATCGAAGGTGGTTCCGCGCTTC
ACGAAGCACTGGGCAAGTACCCCGTGCAGTTCGACGAGCTCTATCGCAACCTGGTCCACGCGGGCGAAGCCTCGGGTGTG
CTCGACTCGGTGCTGGACACGGTGGCGACGTACAAGGAACGCACCGAGGCGATCAAGGCCAAGATCAAGAAAGCCCTGTT
CTATCCGGTGATGGTGCTGGCCGTGGCCCTGCTGGTCAGCATGATCATGCTGCTCTTCGTGGTGCCGGTGTTTGCGCAGA
CGTTCAAGGACGCTGGCGCCGAGCTTCCTGCACCGACGCAGGTCGTGATCAGCGCGTCGGAGTTCATGAAATCCTACTGG
TGGCTGGTCGTTGGCTCCATTGTGGGCGGCATCGTCGCCCTGGTGATGGCCAAGCAAAGGTCGGTCAAGTTCGCGCACTT
CCTTGATCGCGTCATGCTGAAGGTGCCGGTGATCGGCAATATCCTCCGGCAGTCCGCCATCGCTCGCTTTGCGCGCACGC
TCGGCGTGACCTTCCGAGCTGGTGTGCCGCTGGTCGAGGCCATGGATGCCGTGGCGGGTGCCACCGGCAGCGTGGTCTAT
GGCGACGCCGTGAAGCAGATGCGCGAAGACGTGGCCGTGGGCCACCAGCTGCAGCTGTCGATGCGACAGACCGGCCTGTT
CCCGAACATGGTCGTGCAGATGACCGCCATCGGCGAAGAATCCGGTGCCCTCGACCACATGCTGTTCAAGGTGGCCGAGT
TCTACGAGGAAGAGGTCAACAACGCGGTCGATACGCTCTCCACCCTGCTCGAACCGCTGATCATGGTGATCCTGGGCGTA
CTCGTCGGCGGCATGGTCGTCTCGCTGTACCTGCCGATCTTCAAGCTCGCGAGCACCGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(86-209)

Type II secretion system (T2SS), protein F (T2SSF)

(290-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G8Q0R0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

55.388

95

0.526
  pilC Pseudomonas stutzeri DSM 10701

53

95.238

0.505
  pilC Acinetobacter baumannii D1279779

48.75

95.238

0.464
  pilC Acinetobacter baylyi ADP1

47.073

97.619

0.46
  pilG Neisseria meningitidis 44/76-A

43.005

91.905

0.395
  pilG Neisseria gonorrhoeae MS11

43.005

91.905

0.395
  pilC Vibrio cholerae strain A1552

40.602

95

0.386
  pilC Vibrio campbellii strain DS40M4

39.698

94.762

0.376
  pilC Thermus thermophilus HB27

37.055

100

0.371