Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PSBA01_RS06910 Genome accession   NZ_CP060390
Coordinates   1614032..1615087 (+) Length   351 a.a.
NCBI ID   WP_058025415.1    Uniprot ID   -
Organism   Psychrobacter sp. KCTC 72983     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1609032..1620087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSBA01_RS06900 - 1610569..1611093 (+) 525 WP_058025417.1 DUF6586 family protein -
  PSBA01_RS06905 - 1611194..1613839 (-) 2646 WP_186473571.1 penicillin-binding protein 1A -
  PSBA01_RS06910 comM 1614032..1615087 (+) 1056 WP_058025415.1 type IV pilus assembly protein PilM Machinery gene
  PSBA01_RS06915 - 1615087..1615737 (+) 651 WP_071002929.1 PilN domain-containing protein -
  PSBA01_RS06920 - 1615734..1616468 (+) 735 WP_186473573.1 type 4a pilus biogenesis protein PilO -
  PSBA01_RS06925 - 1616468..1617001 (+) 534 WP_058025948.1 pilus assembly protein PilP -
  PSBA01_RS06930 pilQ 1617029..1619398 (+) 2370 WP_186473575.1 type IV pilus secretin PilQ -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 38304.62 Da        Isoelectric Point: 4.3824

>NTDB_id=475620 PSBA01_RS06910 WP_058025415.1 1614032..1615087(+) (comM) [Psychrobacter sp. KCTC 72983]
MRLFTSKSRHLIGVDICATSVKIVDIQRQQGMFHLKSYGIERLPEGVVVDKLLVDTEAVGNIITSLARRCQVAGSNAATA
VSGSAVITKIIDMDMMLSDVEREAQIRLDADQYVPYPLEDVNLDFEVLGPSLVSEDMVQVLLAASRSENVDQRVDALAFG
GMQTKVMDIESHAIERAFGLMADNLPNMPELVALVDIGHNQTTLYIAKNGEFIYSREQLFGGVQLTEAIQNRYGLSAEEA
TLSKRERTLPDDYYPEVLTPFIENTIQQITRSLQFYFSSSQYSSIDHVVLAGGSSSIAGLAGMAQQKLGVSVSVANPFTN
MTIAPNIDNEQLTIDAPGLMAACGLALRSFD

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=475620 PSBA01_RS06910 WP_058025415.1 1614032..1615087(+) (comM) [Psychrobacter sp. KCTC 72983]
GTGAGGCTATTTACTTCAAAAAGTCGACATTTGATTGGTGTGGATATTTGTGCCACTTCAGTAAAAATAGTGGACATACA
GCGTCAACAAGGCATGTTCCACCTAAAATCTTACGGTATTGAGAGACTACCGGAAGGTGTAGTCGTCGACAAACTCCTAG
TTGATACAGAGGCGGTTGGCAACATTATAACGAGTCTAGCAAGACGTTGCCAAGTTGCGGGCAGTAATGCTGCAACCGCC
GTATCAGGATCTGCCGTCATCACCAAAATTATTGATATGGATATGATGCTAAGCGATGTTGAGCGTGAAGCACAAATACG
TTTGGATGCTGATCAATATGTGCCTTATCCATTAGAAGATGTCAATTTAGATTTTGAGGTGCTAGGTCCATCTTTAGTGA
GTGAGGATATGGTACAAGTACTGCTTGCGGCCTCTCGCTCAGAAAACGTTGATCAGCGTGTTGATGCGTTGGCCTTTGGT
GGTATGCAAACCAAGGTTATGGATATCGAGTCACATGCAATAGAGCGCGCTTTTGGACTGATGGCAGACAATCTGCCAAA
TATGCCAGAACTGGTCGCTTTGGTTGATATCGGCCATAATCAAACCACTTTATATATCGCAAAGAATGGTGAGTTTATTT
ATAGTCGCGAGCAATTGTTTGGCGGTGTTCAGTTAACAGAAGCGATTCAAAACCGGTATGGGTTGTCAGCTGAAGAGGCA
ACGCTGAGCAAACGTGAGCGCACATTGCCTGATGACTACTATCCTGAAGTTTTGACCCCTTTTATAGAAAATACCATTCA
GCAAATCACTCGTTCCTTACAATTTTACTTCTCCTCAAGTCAGTATAGTAGTATTGACCACGTGGTACTTGCGGGTGGTA
GTAGCTCCATTGCAGGTCTTGCTGGGATGGCACAACAAAAACTCGGTGTAAGCGTTAGTGTTGCCAATCCGTTCACCAAT
ATGACCATTGCGCCTAATATCGATAATGAGCAATTGACCATTGACGCGCCAGGATTAATGGCTGCATGCGGTCTTGCGTT
AAGGAGCTTTGACTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

50.142

100

0.501
  pilM Acinetobacter baumannii D1279779

49.573

100

0.496
  comM Acinetobacter baylyi ADP1

47.863

100

0.479
  pilM Legionella pneumophila strain ERS1305867

40.793

100

0.41