Detailed information NTG0475570

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: H7696_RS02980
• Genome accession: NZ_CP060386
• Coordinates: 619029..619898 (-)
• Length: 289 a.a.
• NCBI ID: WP_017635919.1
• Uniprot ID: A0A2I3C9C8
• Organism: Vibrio alginolyticus strain Vb1833
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 614029..624898

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H7696_RS02945 (H7696_02945)	rpsP	614285..614533 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
H7696_RS02950 (H7696_02950)	rimM	614563..615111 (+)	549	WP_005379964.1	ribosome maturation factor RimM	-
H7696_RS02955 (H7696_02955)	trmD	615139..615900 (+)	762	WP_005385420.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
H7696_RS02960 (H7696_02960)	rplS	615942..616295 (+)	354	WP_005379971.1	50S ribosomal protein L19	-
H7696_RS02965 (H7696_02965)	yacG	617293..617487 (-)	195	WP_017635922.1	DNA gyrase inhibitor YacG	-
H7696_RS02970 (H7696_02970)	zapD	617646..618386 (-)	741	WP_017820392.1	cell division protein ZapD	-
H7696_RS02975 (H7696_02975)	coaE	618414..619028 (-)	615	WP_186584665.1	dephospho-CoA kinase	-
H7696_RS02980 (H7696_02980)	pilD	619029..619898 (-)	870	WP_017635919.1	A24 family peptidase	Machinery gene
H7696_RS02985 (H7696_02985)	pilC	619963..621186 (-)	1224	WP_017635918.1	type II secretion system F family protein	Machinery gene
H7696_RS02990 (H7696_02990)	pilB	621210..622895 (-)	1686	WP_132936924.1	type IV-A pilus assembly ATPase PilB	Machinery gene
H7696_RS02995 (H7696_02995)	-	622898..623383 (-)	486	WP_025768185.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
H7696_RS03000 (H7696_03000)	nadC	623646..624533 (-)	888	WP_005379983.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32563.76 Da
• Isoelectric Point: 6.8450

>NTDB_id=475570 H7696_RS02980 WP_017635919.1 619029..619898(-) (pilD) [Vibrio alginolyticus strain Vb1833]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQATISARYPLIELLTAFCSGFIAYYFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
VFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGDQILNWYFTSVLGV

Nucleotide

• Length: 870 bp

>NTDB_id=475570 H7696_RS02980 WP_017635919.1 619029..619898(-) (pilD) [Vibrio alginolyticus strain Vb1833]
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCACCATCTTCGGTCTGATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAGCTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTTCCACGCTCCTCCTGCCAGAAATGCGCAACACCGATACGTATTCGC
GACAACATTCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGTCACAACTGTCAGGCAACCATTAGTGCACGCTATCC
ACTGATTGAACTGCTCACCGCGTTCTGTTCTGGCTTTATCGCTTATTACTTTGGTTTTAGTTACTTTACCGTTGCCCTAC
TCTTTTTTACTTTTATCTTAATCGCCGCAACATTTATCGATCTCGATACTATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAAGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGTTACTTACCGGTAAAGAAGGAATGGGGTATGGTGATTTTA
AACTACTGGCGGCACTAGGAGCTTGGCTAGGTTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GTATTTGGCATCATTCAACTACGCTTGCAAAAGCAGGGAATTGAAAAAGCTTTCCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGACCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

3D structure

• AlphaFold DB: A0A2I3C9C8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	91.349	100	0.913
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Acinetobacter baumannii D1279779	52.222	93.426	0.488
pilD	Acinetobacter nosocomialis M2	51.852	93.426	0.484
pilD	Neisseria gonorrhoeae MS11	47.653	95.848	0.457