Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H7F36_RS04055 Genome accession   NZ_CP060296
Coordinates   843938..844459 (-) Length   173 a.a.
NCBI ID   WP_187053469.1    Uniprot ID   A0A7G8W228
Organism   Variovorax sp. PAMC28562     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 838938..849459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7F36_RS04035 (H7F36_04035) - 839371..841092 (+) 1722 WP_187053466.1 long-chain-fatty-acid--CoA ligase -
  H7F36_RS04040 (H7F36_04040) mnmA 841148..842251 (+) 1104 WP_187053467.1 tRNA 2-thiouridine(34) synthase MnmA -
  H7F36_RS04045 (H7F36_04045) - 842269..843273 (-) 1005 WP_187053468.1 LLM class flavin-dependent oxidoreductase -
  H7F36_RS04050 (H7F36_04050) - 843512..843904 (+) 393 WP_261802490.1 BLUF domain-containing protein -
  H7F36_RS04055 (H7F36_04055) ssb 843938..844459 (-) 522 WP_187053469.1 single-stranded DNA-binding protein Machinery gene
  H7F36_RS04060 (H7F36_04060) uvrA 844598..847666 (+) 3069 WP_187053470.1 excinuclease ABC subunit UvrA -
  H7F36_RS22125 - 847811..847948 (+) 138 Protein_798 taurine ABC transporter permease -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18467.55 Da        Isoelectric Point: 5.9576

>NTDB_id=475534 H7F36_RS04055 WP_187053469.1 843938..844459(-) (ssb) [Variovorax sp. PAMC28562]
MASVNKVILVGNLGRDPESRTFPSGDQVCNVTIATTDKWKDKSSGEMKEATEWHRLVFNGRLAEIAAQYLRKGSQIYVEG
QIRTRKFTDKEGVEKFATEIRVDQMQMLGSRQGMGGPQGGGDDEGGYSQGGGGGGGYAPRAPAAAPRAPAPAPRQAPAKS
SSGFDDMDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=475534 H7F36_RS04055 WP_187053469.1 843938..844459(-) (ssb) [Variovorax sp. PAMC28562]
ATGGCATCGGTCAATAAAGTCATCCTCGTCGGCAATCTCGGGCGCGATCCCGAAAGCCGCACCTTTCCCAGTGGCGATCA
GGTCTGTAATGTGACCATCGCGACCACCGACAAGTGGAAAGACAAGTCCAGTGGCGAGATGAAGGAGGCGACCGAGTGGC
ACCGCCTCGTTTTCAACGGCAGGCTGGCTGAAATTGCCGCGCAGTACCTGCGCAAGGGCTCGCAGATCTACGTCGAAGGA
CAGATTCGGACCCGCAAGTTCACCGACAAGGAAGGCGTCGAAAAGTTCGCGACCGAGATTCGTGTCGACCAGATGCAGAT
GCTCGGTAGCCGGCAGGGTATGGGCGGCCCGCAAGGTGGTGGCGACGACGAAGGCGGCTATTCGCAAGGTGGGGGCGGTG
GCGGCGGCTACGCACCGCGCGCTCCGGCGGCTGCGCCTCGCGCTCCTGCACCGGCGCCACGCCAGGCACCTGCCAAGTCG
TCGTCCGGCTTCGACGACATGGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G8W228

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.619

100

0.509
  ssb Vibrio cholerae strain A1552

47.826

100

0.509
  ssb Neisseria gonorrhoeae MS11

44

100

0.445
  ssb Neisseria meningitidis MC58

43.429

100

0.439