Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H7F35_RS14150 Genome accession   NZ_CP060295
Coordinates   2941387..2941962 (+) Length   191 a.a.
NCBI ID   WP_187113468.1    Uniprot ID   A0A7G8VRL1
Organism   Variovorax sp. PAMC26660     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2942080..2961352 2941387..2941962 flank 118


Gene organization within MGE regions


Location: 2941387..2961352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7F35_RS14150 (H7F35_14150) ssb 2941387..2941962 (+) 576 WP_187113468.1 single-stranded DNA-binding protein Machinery gene
  H7F35_RS14155 (H7F35_14155) - 2942200..2943399 (+) 1200 WP_187113469.1 tyrosine-type recombinase/integrase -
  H7F35_RS14160 (H7F35_14160) - 2943362..2944906 (+) 1545 WP_187113470.1 site-specific integrase -
  H7F35_RS14165 (H7F35_14165) - 2944910..2946325 (+) 1416 WP_187113471.1 hypothetical protein -
  H7F35_RS14170 (H7F35_14170) - 2946541..2947299 (-) 759 WP_315970481.1 IS3 family transposase -
  H7F35_RS34755 - 2947248..2947610 (-) 363 WP_261803623.1 transposase -
  H7F35_RS14175 (H7F35_14175) - 2947767..2948282 (+) 516 WP_261803624.1 hypothetical protein -
  H7F35_RS14180 (H7F35_14180) - 2949139..2949807 (-) 669 WP_187113472.1 HNH endonuclease -
  H7F35_RS34765 - 2950189..2950566 (-) 378 Protein_2817 DDE-type integrase/transposase/recombinase -
  H7F35_RS14190 (H7F35_14190) - 2950574..2951281 (-) 708 WP_222622024.1 hypothetical protein -
  H7F35_RS14195 (H7F35_14195) - 2951550..2951744 (-) 195 Protein_2819 transposase domain-containing protein -
  H7F35_RS14200 (H7F35_14200) - 2951913..2953799 (+) 1887 WP_187113474.1 DUF4209 domain-containing protein -
  H7F35_RS14205 (H7F35_14205) - 2953900..2954367 (-) 468 WP_261803625.1 toll/interleukin-1 receptor domain-containing protein -
  H7F35_RS14210 (H7F35_14210) - 2954784..2955509 (-) 726 WP_187113475.1 restriction endonuclease -
  H7F35_RS14215 (H7F35_14215) - 2955620..2957572 (-) 1953 WP_187113476.1 UvrD-helicase domain-containing protein -
  H7F35_RS14220 (H7F35_14220) - 2957569..2959938 (-) 2370 WP_187113477.1 AAA family ATPase -
  H7F35_RS35040 - 2960336..2960875 (-) 540 WP_315970477.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 19867.75 Da        Isoelectric Point: 5.9554

>NTDB_id=475524 H7F35_RS14150 WP_187113468.1 2941387..2941962(+) (ssb) [Variovorax sp. PAMC26660]
MASVNKVIVVGNLGRDPEMRTFPSGDQVANVTVATTDRWKDKQSGEMREATEWHRIVFNGRLAEIAGQYLRKGSQVYVEG
SLRTRKWTDKDGIEKYTTEIRADQMQMLGSRQGQGGPSGGPEDDGGYSSQGGGGGGYSQGGGGGGNGGGGGGGYAPRAPA
AAAPRAPAPAPRQAPAKSSSGFDDMDDDIPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=475524 H7F35_RS14150 WP_187113468.1 2941387..2941962(+) (ssb) [Variovorax sp. PAMC26660]
ATGGCATCGGTCAATAAAGTCATCGTCGTCGGCAACCTGGGGCGCGACCCCGAAATGCGGACCTTCCCGAGCGGCGATCA
GGTCGCAAACGTCACAGTGGCCACCACCGATCGCTGGAAAGACAAGCAAAGCGGCGAAATGCGCGAAGCCACCGAATGGC
ACCGCATCGTTTTCAACGGCCGCCTGGCCGAAATCGCCGGTCAATACCTGCGCAAGGGCTCGCAGGTCTACGTCGAAGGA
AGCCTGCGCACGCGCAAGTGGACCGACAAGGACGGCATCGAAAAATACACCACCGAGATCCGCGCCGACCAGATGCAGAT
GCTCGGCAGCCGTCAAGGCCAGGGCGGCCCATCGGGCGGTCCTGAAGACGACGGCGGTTACTCGTCGCAAGGTGGCGGCG
GTGGCGGCTACTCGCAGGGTGGCGGTGGTGGCGGCAACGGCGGTGGTGGTGGTGGCGGATACGCGCCCCGTGCACCTGCT
GCAGCGGCACCGCGCGCTCCGGCGCCGGCTCCACGTCAGGCACCGGCCAAATCGTCGTCGGGCTTCGATGACATGGACGA
CGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G8VRL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.332

100

0.529
  ssb Vibrio cholerae strain A1552

45.96

100

0.476
  ssb Neisseria gonorrhoeae MS11

44.271

100

0.445
  ssb Neisseria meningitidis MC58

43.75

100

0.44