Detailed information NTG0475440

Bioinformatically predicted

Overview

• Name: ysxA/radC
• Type: Machinery gene
• Locus tag: JYA46_RS02110
• Genome accession: NZ_CP070991
• Coordinates: 368916..369602 (+)
• Length: 228 a.a.
• NCBI ID: WP_000692876.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain CBS2016-05
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 363916..374602

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JYA46_RS02095 (JYA46_000419)	-	364036..366666 (+)	2631	WP_000425345.1	valine--tRNA ligase	-
JYA46_RS02100 (JYA46_000420)	-	366679..367950 (+)	1272	WP_001108341.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-
JYA46_RS02105 (JYA46_000421)	-	368212..368919 (+)	708	WP_210994239.1	A24 family peptidase	-
JYA46_RS02110 (JYA46_000422)	ysxA/radC	368916..369602 (+)	687	WP_000692876.1	DNA repair protein RadC	Machinery gene
JYA46_RS02115 (JYA46_000423)	-	369670..369954 (+)	285	WP_000171863.1	hypothetical protein	-
JYA46_RS02120 (JYA46_000424)	-	370071..370268 (-)	198	WP_000025835.1	hypothetical protein	-
JYA46_RS02125 (JYA46_000425)	-	370428..370901 (+)	474	WP_072491711.1	DUF4930 family protein	-
JYA46_RS02130 (JYA46_000426)	-	370975..371094 (+)	120	WP_000840603.1	hypothetical protein	-
JYA46_RS02135 (JYA46_000427)	mreC	371292..372134 (+)	843	WP_031868768.1	rod shape-determining protein MreC	-
JYA46_RS02140 (JYA46_000428)	mreD	372134..372664 (+)	531	WP_001259925.1	rod shape-determining protein MreD	-
JYA46_RS02145 (JYA46_000429)	rplU	372831..373139 (+)	309	WP_000457386.1	50S ribosomal protein L21	-
JYA46_RS02150 (JYA46_000430)	-	373145..373465 (+)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
JYA46_RS02155 (JYA46_000431)	rpmA	373477..373761 (+)	285	WP_000916187.1	50S ribosomal protein L27	-

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 25297.21 Da
• Isoelectric Point: 6.7572

>NTDB_id=475440 JYA46_RS02110 WP_000692876.1 368916..369602(+) (ysxA/radC) [Staphylococcus aureus strain CBS2016-05]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKESCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

• Length: 687 bp

>NTDB_id=475440 JYA46_RS02110 WP_000692876.1 368916..369602(+) (ysxA/radC) [Staphylococcus aureus strain CBS2016-05]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGTATAGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACATTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAAGCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGCGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACGAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (103-222)

• UPF0758 N-terminal (UPF0758_N) (3-80)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377