Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   H7683_RS15255 Genome accession   NZ_CP060288
Coordinates   3271253..3272593 (-) Length   446 a.a.
NCBI ID   WP_115292242.1    Uniprot ID   -
Organism   Pseudomonas mendocina strain CPS5     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3266253..3277593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7683_RS15215 (H7683_15210) - 3266604..3266927 (-) 324 WP_017361295.1 hypothetical protein -
  H7683_RS15220 (H7683_15215) - 3266939..3267472 (-) 534 WP_209449267.1 PilX N-terminal domain-containing pilus assembly protein -
  H7683_RS15225 (H7683_15220) - 3267484..3268323 (-) 840 WP_080764245.1 PilW family protein -
  H7683_RS15230 (H7683_15225) pilV 3268320..3268886 (-) 567 WP_017361292.1 type IV pilus modification protein PilV -
  H7683_RS15235 (H7683_15230) - 3268903..3269418 (-) 516 WP_017361291.1 GspH/FimT family pseudopilin -
  H7683_RS15240 (H7683_15235) - 3269529..3269933 (-) 405 WP_169746326.1 GspH/FimT family protein -
  H7683_RS15250 (H7683_15245) thiO 3270136..3271236 (+) 1101 WP_209451039.1 glycine oxidase ThiO -
  H7683_RS15255 (H7683_15250) pilR 3271253..3272593 (-) 1341 WP_115292242.1 sigma-54 dependent transcriptional regulator Regulator
  H7683_RS15260 (H7683_15255) pilS 3272596..3274188 (-) 1593 WP_013714193.1 ATP-binding protein Regulator
  H7683_RS24480 - 3274178..3274414 (-) 237 WP_244973825.1 PP0621 family protein -
  H7683_RS15265 (H7683_15260) - 3274610..3275602 (-) 993 WP_013714195.1 outer membrane protein assembly factor BamD -
  H7683_RS15270 (H7683_15265) rluD 3275741..3276715 (+) 975 WP_143498145.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  H7683_RS15275 (H7683_15270) pgeF 3276712..3277443 (+) 732 WP_115292241.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49729.12 Da        Isoelectric Point: 5.6137

>NTDB_id=475382 H7683_RS15255 WP_115292242.1 3271253..3272593(-) (pilR) [Pseudomonas mendocina strain CPS5]
MNRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAREPFDLCLTDMRLPDGTGLDLVQHIQQRHPQVPVAM
ITAYGSLDTAINSLKAGAFDFLTKPVDLGRLRELVATALRIRAPEGEETPVDSRLLGDSPPMKSLRKQILKLSRSQAPVY
ISGESGSGKELVARLIHEQGPRIEQPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQEVVVDVRILCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIALLAEVM
LARLADGTGLAAAKLHPDALEKLKSYRFPGNVRELENMLERAYTLCEDDQITPGDLRLADASGPGNEGGEASLAQIDNLE
DYLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=475382 H7683_RS15255 WP_115292242.1 3271253..3272593(-) (pilR) [Pseudomonas mendocina strain CPS5]
ATGAACCGTCAGAGAGCCCTGATCGTCGACGACGAACCCGATATCCGCGAACTGTTGGAAATCACCCTCGGACGCATGAA
GCTGGACACCCGCAGCGCGCGCAACGTCAAAGAGGCGCGCGAGTGGCTGGCGCGCGAGCCCTTCGACTTGTGCCTGACCG
ATATGCGCCTGCCCGACGGCACCGGCCTGGATCTGGTGCAGCACATCCAGCAGCGCCACCCGCAGGTTCCCGTGGCGATG
ATCACCGCTTACGGCAGCCTGGATACCGCGATCAACTCGCTCAAGGCCGGGGCCTTCGACTTTCTCACCAAACCGGTGGA
CCTCGGCCGCCTGCGCGAACTGGTGGCGACCGCCCTGCGCATTCGCGCACCCGAAGGTGAGGAAACACCAGTCGATAGCC
GCCTGCTCGGCGACTCGCCACCGATGAAGTCGCTGCGTAAGCAGATCCTGAAGCTTTCGCGCAGTCAGGCACCGGTCTAC
ATCAGCGGCGAATCGGGCAGTGGCAAGGAGCTGGTTGCCCGCCTGATCCATGAGCAGGGCCCACGCATCGAACAACCGTT
CGTGCCGGTCAACTGCGGCGCGATACCCTCGGAGTTGATGGAAAGCGAGTTCTTCGGTCACAAGAAGGGCAGCTTCACCG
GCGCCATCGAAGACAAGCAGGGGCTGTTCCAGGCAGCCAATGGCGGCACCCTGTTCCTCGACGAAGTCGCCGATCTGCCG
TTGCCAATGCAGGTCAAACTGCTGCGCGCGATTCAGGAGAAGGCCGTGCGCGCCGTCGGTGGCCAGCAGGAAGTGGTGGT
CGATGTGCGCATCCTCTGCGCCACCCACAAGGACCTTGCCGCCGAAGTCGCCGCGGGCCGCTTCCGTCAGGACCTCTACT
ACCGCCTCAACGTCATCGAGCTGCGCGTGCCACCACTGCGTGAACGTCGCGAGGACATTGCCCTACTGGCTGAGGTGATG
CTTGCACGCCTGGCCGATGGCACCGGCCTGGCAGCTGCCAAGCTGCACCCCGATGCACTGGAAAAGCTGAAGAGCTACCG
TTTCCCGGGCAACGTGCGCGAGCTAGAGAACATGCTCGAACGCGCCTACACCCTCTGCGAAGACGATCAGATAACACCCG
GCGACCTACGCCTGGCCGACGCCAGCGGCCCTGGCAACGAAGGAGGCGAAGCCAGCCTGGCGCAGATCGACAACCTCGAG
GACTACCTCGAGGACATCGAACGCAAGCTGATCATGCAGGCCTTGGAAGAAACACGCTGGAATCGCACGGCCGCGGCCCA
GCGCCTGGGCCTGACCTTCCGTTCGATGCGCTACCGCCTGAAGAAGCTGGGCATCGATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Response regulator receiver domain (Response_reg)

(7-115)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

89.462

100

0.895
  pilR Acinetobacter baumannii strain A118

49.565

100

0.511
  luxO Vibrio cholerae strain A1552

38.117

100

0.381