Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   H7683_RS15260 Genome accession   NZ_CP060288
Coordinates   3272596..3274188 (-) Length   530 a.a.
NCBI ID   WP_013714193.1    Uniprot ID   A0A379IYZ0
Organism   Pseudomonas mendocina strain CPS5     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3267596..3279188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7683_RS15230 (H7683_15225) pilV 3268320..3268886 (-) 567 WP_017361292.1 type IV pilus modification protein PilV -
  H7683_RS15235 (H7683_15230) - 3268903..3269418 (-) 516 WP_017361291.1 GspH/FimT family pseudopilin -
  H7683_RS15240 (H7683_15235) - 3269529..3269933 (-) 405 WP_169746326.1 GspH/FimT family protein -
  H7683_RS15250 (H7683_15245) thiO 3270136..3271236 (+) 1101 WP_209451039.1 glycine oxidase ThiO -
  H7683_RS15255 (H7683_15250) pilR 3271253..3272593 (-) 1341 WP_115292242.1 sigma-54 dependent transcriptional regulator Regulator
  H7683_RS15260 (H7683_15255) pilS 3272596..3274188 (-) 1593 WP_013714193.1 ATP-binding protein Regulator
  H7683_RS24480 - 3274178..3274414 (-) 237 WP_244973825.1 PP0621 family protein -
  H7683_RS15265 (H7683_15260) - 3274610..3275602 (-) 993 WP_013714195.1 outer membrane protein assembly factor BamD -
  H7683_RS15270 (H7683_15265) rluD 3275741..3276715 (+) 975 WP_143498145.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  H7683_RS15275 (H7683_15270) pgeF 3276712..3277443 (+) 732 WP_115292241.1 peptidoglycan editing factor PgeF -
  H7683_RS15280 (H7683_15275) - 3277576..3278166 (+) 591 WP_026041940.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58975.11 Da        Isoelectric Point: 8.1909

>NTDB_id=475383 H7683_RS15260 WP_013714193.1 3272596..3274188(-) (pilS) [Pseudomonas mendocina strain CPS5]
MTADLSLQGGTQGRRILRLYHFYRLSIGLALILLISSNLDEQFLDVVHIELFRTGSWAYLILNILIAVLVQKPKHLMQLF
SLALVDVIFLSALFYAAGGTPSGIGNLLVVAVAIANILLRGRIGLLIAAIAAIALIYLTFYLSLSRPAAAAQYVQAGALG
ALCFAGALFIQGITRRLQVSESLAEQRAADVANLEELNEQILQRMRTGILVLDTQHRVLLANQGATQLLGRGELTGKIID
PHCPELVKRLQQWLHNPTLRPDSLQAQVDGPVLQPSFISLQRGEQQHILVFLDDISQIAQQAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLQESEDLQGPDQRLAQIIQDHSKRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFASEFRSSAPAD
RQIHLETQGGSLQTRMDPHQLTQVLTNLVQNGLRYSAQKHRLGQVWLRLFRDESSDLPVLEILDDGPGVPPEQEQHIFEP
FYTTENKGTGLGLYISRELCQGNQARLDYKPREGGGSCFRITFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=475383 H7683_RS15260 WP_013714193.1 3272596..3274188(-) (pilS) [Pseudomonas mendocina strain CPS5]
GTGACCGCTGACCTCAGCTTGCAAGGCGGTACGCAGGGGCGACGCATCCTCAGGCTTTATCACTTCTATCGCCTGAGCAT
CGGCCTGGCCCTGATCCTGCTGATATCCAGCAACCTCGATGAACAGTTTCTGGATGTGGTGCATATCGAGCTGTTTCGGA
CAGGCAGCTGGGCCTATCTGATCCTCAACATCCTCATCGCCGTGCTGGTGCAAAAGCCCAAGCACCTGATGCAGCTGTTC
AGCCTGGCGCTGGTGGACGTGATTTTCCTGTCCGCGCTGTTCTATGCCGCTGGCGGCACGCCCAGCGGCATCGGCAACCT
GCTGGTGGTAGCGGTGGCCATCGCCAATATTCTGCTGCGCGGCCGCATCGGCCTGCTGATCGCCGCCATCGCTGCCATCG
CACTTATTTACCTGACCTTCTATCTCAGCCTCAGCCGCCCCGCCGCTGCCGCCCAGTACGTGCAGGCCGGCGCACTTGGC
GCGCTGTGTTTCGCCGGCGCACTGTTTATCCAGGGCATCACTCGCCGCCTGCAGGTCAGCGAAAGCCTGGCCGAGCAACG
CGCGGCCGATGTCGCCAACCTGGAGGAGCTCAACGAGCAGATATTGCAGCGCATGCGCACCGGTATCCTGGTGCTCGATA
CCCAGCATCGCGTGCTCCTGGCCAACCAGGGCGCTACGCAACTGCTGGGCCGCGGGGAGCTGACCGGCAAGATCATCGAC
CCGCACTGCCCGGAACTGGTCAAACGGCTGCAACAGTGGCTGCACAACCCGACACTGCGCCCGGACAGCCTTCAGGCGCA
AGTCGATGGCCCGGTCCTGCAGCCCAGTTTCATTTCCCTGCAACGCGGCGAGCAGCAGCACATCCTGGTGTTTCTCGACG
ACATTTCGCAGATTGCCCAGCAGGCGCAACAGCTCAAACTGGCCTCGCTCGGCCGCTTGACCGCCGGTATCGCCCACGAG
ATTCGCAACCCGCTTGGTGCGATCAGCCACGCTGCACAGCTGCTGCAGGAATCGGAAGACCTGCAAGGTCCTGATCAACG
CCTAGCGCAGATCATTCAGGATCACTCCAAGCGCATGAATCTGGTGATCGAGAACGTACTGCAGCTGTCGCGCCGGCGCC
AGGCCGAGCCGCAGCTACTGGACCTGAAGTACTGGCTGCACCGCTTCGCCAGCGAGTTCCGCAGCTCGGCACCGGCTGAC
CGGCAGATCCATCTGGAAACCCAGGGCGGCAGCCTGCAAACACGCATGGACCCACACCAGTTGACCCAGGTGCTGACCAA
TCTGGTGCAGAACGGCTTACGCTACAGCGCGCAGAAACATCGACTCGGCCAGGTATGGCTACGCCTGTTCCGCGACGAGA
GCAGCGACCTGCCAGTGCTGGAAATCCTCGACGACGGCCCCGGTGTGCCGCCCGAGCAGGAGCAGCATATCTTCGAGCCC
TTCTACACCACCGAGAACAAGGGCACCGGCCTCGGCCTGTATATTTCTCGCGAACTGTGCCAGGGCAACCAGGCCCGCCT
CGACTACAAACCTCGTGAAGGTGGCGGTAGTTGCTTCCGCATCACCTTCGCCCATCCGCGCAAACTGAGCTGA

Domains

Predicted by InterproScan.

PAS domain (PAS_8)

(199-254)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A379IYZ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

67.63

97.925

0.662