Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H7683_RS06095 Genome accession   NZ_CP060288
Coordinates   1291048..1291539 (-) Length   163 a.a.
NCBI ID   WP_003463262.1    Uniprot ID   A0A1G7PSP6
Organism   Pseudomonas mendocina strain CPS5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1286048..1296539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7683_RS06080 (H7683_06080) - 1286796..1287949 (+) 1154 WP_126403479.1 IS3 family transposase -
  H7683_RS06085 (H7683_06085) - 1288074..1289636 (-) 1563 WP_209450537.1 site-specific integrase -
  H7683_RS06090 (H7683_06090) - 1289629..1290915 (-) 1287 WP_209450538.1 tyrosine-type recombinase/integrase -
  H7683_RS06095 (H7683_06095) ssb 1291048..1291539 (-) 492 WP_003463262.1 single-stranded DNA-binding protein Machinery gene
  H7683_RS06100 (H7683_06100) - 1291549..1292943 (-) 1395 WP_209450539.1 MFS transporter -
  H7683_RS06105 (H7683_06105) uvrA 1293134..1295968 (+) 2835 WP_041980438.1 excinuclease ABC subunit UvrA -
  H7683_RS06110 (H7683_06110) bfr 1296016..1296480 (-) 465 WP_074858054.1 bacterioferritin -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18170.27 Da        Isoelectric Point: 5.3412

>NTDB_id=475367 H7683_RS06095 WP_003463262.1 1291048..1291539(-) (ssb) [Pseudomonas mendocina strain CPS5]
MARGVNKVILVGTCGQDPETRYLPSGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVALFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPSGDEGGAPRQSRPAPQREPQQAPRQERPAPQQAQPAPDYDSFDDD
IPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=475367 H7683_RS06095 WP_003463262.1 1291048..1291539(-) (ssb) [Pseudomonas mendocina strain CPS5]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACCTGCGGCCAGGACCCGGAAACACGCTACCTGCCCAGCGGCAA
TGCGGTAACCAACCTGAGCCTGGCCACCAGTGAGCAGTGGACCGACAAGCAGACCGGGCAGAAGGTCGAGAAGACCGAAT
GGCACCGCGTTGCCCTGTTCGGCAAGGTCGCCGAGATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAG
GGCAAGCTGCAGACCCGCGAGTGGGAAAAGGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGTCGTCCTAGCGGTGATGAAGGCGGCGCGCCGCGCCAGTCGCGTCCGGCCCCGCAGCGTGAAC
CGCAACAGGCGCCGCGCCAGGAGCGTCCCGCTCCGCAGCAGGCCCAGCCAGCGCCTGACTACGACAGCTTCGACGACGAC
ATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1G7PSP6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.303

100

0.626
  ssb Glaesserella parasuis strain SC1401

49.171

100

0.546
  ssb Neisseria meningitidis MC58

48.023

100

0.521
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.521