Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   H7X63_RS17780 Genome accession   NZ_CP060285
Coordinates   3723530..3724660 (+) Length   376 a.a.
NCBI ID   WP_002043965.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XYAB2018     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3718530..3729660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7X63_RS17755 - 3718791..3718997 (-) 207 WP_000182542.1 hypothetical protein -
  H7X63_RS17760 - 3719051..3721165 (-) 2115 WP_001120663.1 TonB-dependent copper receptor -
  H7X63_RS17765 - 3721237..3721665 (-) 429 WP_000231985.1 DUF2946 family protein -
  H7X63_RS17770 def 3721702..3722232 (-) 531 WP_001196539.1 peptide deformylase -
  H7X63_RS17775 tsaP 3722355..3723509 (+) 1155 WP_000755281.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  H7X63_RS17780 dprA 3723530..3724660 (+) 1131 WP_002043965.1 DNA-processing protein DprA Machinery gene
  H7X63_RS17785 - 3724711..3725280 (+) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  H7X63_RS17790 - 3725672..3726592 (-) 921 WP_186338474.1 DMT family transporter -
  H7X63_RS17795 - 3726698..3727348 (-) 651 WP_086222322.1 TetR/AcrR family transcriptional regulator -
  H7X63_RS17800 - 3727485..3728699 (+) 1215 WP_000372838.1 MFS transporter -
  H7X63_RS17805 - 3728721..3729485 (+) 765 WP_000786954.1 AraC family transcriptional regulator -

Sequence


Protein


Download         Length: 376 a.a.        Molecular weight: 41914.43 Da        Isoelectric Point: 6.5418

>NTDB_id=475299 H7X63_RS17780 WP_002043965.1 3723530..3724660(+) (dprA) [Acinetobacter baumannii strain XYAB2018]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGNCEKATQPDGLAKWSSLGLHANHLKRVNEFQTTQGQAQFEQLVQQV
RQHTDFILTPDDSGYPTQLLPYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDTTYPAQNKKLAEYILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILIDHPEQIIEDLALPTQWQSQQQNQTEEANTNTPEIP
EHLIDLYQSLDWVGQNIDQLVVHHNIPVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=475299 H7X63_RS17780 WP_002043965.1 3723530..3724660(+) (dprA) [Acinetobacter baumannii strain XYAB2018]
ATGCTCACTCAACTTTCTTCACACCACTACCACACACTTAAAGTGTGGTATTTGGTGCAGCACTCTTTAGTCAGCTTTAA
AAAAATTATTGATTATTTTGGAAATTGTGAAAAAGCCACTCAACCTGATGGTTTAGCAAAGTGGTCCTCTCTGGGGCTAC
ATGCTAATCACTTAAAGCGTGTAAACGAATTTCAAACGACCCAAGGTCAGGCGCAGTTTGAACAACTTGTACAACAAGTT
CGTCAGCATACGGATTTTATTTTAACGCCAGATGACTCTGGCTATCCTACTCAATTACTTCCTTATACAGATCACCCACC
TATTATTTTTGGGAAAGGTCAAGCGCAAGCTTTATTGCAACCTCAAATTGCGATTGTCGGTAGCCGAAAACCAAGCCCAC
ATGGACGACAGGTCGCTTATGATTTTGCCTATTACTTAAGTGAAAAGGGCTTTTTCATTAGTAGCGGTCTGGCTTATGGC
ATTGATGAAGCCGCTCATCAAGGTGCATCTGCTCATCAACGTACCATTGCAGTGACGGGTACGGGCTTAGACACTACTTA
TCCAGCTCAAAATAAAAAACTTGCAGAATATATTTTGGCTCAAAACGGCGCCATTATTACTGAGTTTTTACCGGGTACAC
CGCCATTACAACAGCATTTTCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCGACA
TTAAAAAGTGGCTCACTCATCACGGCCAATAAAGCTGCTGAACAAGGTAAAACCGTATTCGCGATTCCGGGCCATATTTA
TAGCGAGTTTCATCAAGGATGCCATCAACTTATTCGTGAAGGTGCAATTTTAATCGACCATCCTGAACAGATTATTGAGG
ATCTTGCTTTACCAACCCAATGGCAAAGTCAGCAACAAAATCAAACTGAAGAAGCTAATACGAATACTCCAGAAATTCCT
GAGCATCTGATTGACCTTTATCAGTCTTTAGACTGGGTAGGACAAAATATTGACCAGCTTGTAGTTCACCATAATATTCC
AGTTTCTGAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

99.734

100

0.997

  dprA Acinetobacter baumannii strain A118

98.404

100

0.984

  dprA Acinetobacter baylyi ADP1

70.341

100

0.713

  dprA Vibrio cholerae strain A1552

43.505

88.032

0.383