Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   DMSX03_RS04730 Genome accession   NZ_CP060271
Coordinates   1040598..1041227 (+) Length   209 a.a.
NCBI ID   WP_017723494.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain DMSX03     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1035598..1046227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMSX03_RS04705 - 1036444..1037430 (-) 987 WP_029378976.1 aromatic acid exporter family protein -
  DMSX03_RS04710 map 1037607..1038359 (+) 753 WP_029378977.1 type I methionyl aminopeptidase -
  DMSX03_RS04715 - 1038464..1038850 (+) 387 WP_029378978.1 hypothetical protein -
  DMSX03_RS04720 liaF 1038867..1039568 (+) 702 WP_029378979.1 cell wall-active antibiotics response protein LiaF -
  DMSX03_RS04725 vraS 1039565..1040608 (+) 1044 WP_029378980.1 sensor histidine kinase Regulator
  DMSX03_RS04730 vraR 1040598..1041227 (+) 630 WP_017723494.1 response regulator transcription factor Regulator
  DMSX03_RS04735 - 1041496..1042641 (-) 1146 WP_029378981.1 YihY/virulence factor BrkB family protein -
  DMSX03_RS04740 - 1042997..1043281 (-) 285 WP_029378982.1 hypothetical protein -
  DMSX03_RS04745 - 1043288..1043752 (-) 465 WP_029378983.1 low molecular weight protein-tyrosine-phosphatase -
  DMSX03_RS04750 - 1043887..1044090 (+) 204 WP_017723498.1 DUF1128 family protein -
  DMSX03_RS04755 - 1044108..1045346 (+) 1239 WP_029378984.1 aminopeptidase -
  DMSX03_RS04760 - 1045434..1045955 (+) 522 WP_186335582.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23734.27 Da        Isoelectric Point: 4.7778

>NTDB_id=475096 DMSX03_RS04730 WP_017723494.1 1040598..1041227(+) (vraR) [Staphylococcus xylosus strain DMSX03]
MPIKVLFVDDHEMVRIGISSYLSTQPDIDVVGEGKSGKEAIEKAHQLNPDLILMDLLMDDMDGVEATEQVKKDLPHMKVV
MLTSYIEDNEVYRALDSGVDSYILKTTSASDIAEAIRKTYNNESVFEAEVLVKMRNRMKQRAELYEMLTEREMEILLLIA
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=475096 DMSX03_RS04730 WP_017723494.1 1040598..1041227(+) (vraR) [Staphylococcus xylosus strain DMSX03]
ATGCCGATTAAAGTTTTATTTGTGGATGACCATGAAATGGTCCGAATTGGAATATCTAGCTATTTATCAACACAACCAGA
TATTGATGTTGTAGGAGAAGGGAAATCGGGAAAGGAAGCAATTGAAAAAGCTCACCAATTGAATCCTGATTTAATATTAA
TGGATTTACTAATGGATGATATGGACGGTGTTGAAGCAACCGAACAAGTAAAAAAAGATTTACCTCATATGAAAGTAGTC
ATGCTTACGAGTTATATAGAAGATAACGAAGTATACCGTGCACTTGATTCTGGTGTGGATAGCTACATTTTAAAAACAAC
GAGTGCTAGTGATATTGCAGAGGCAATAAGAAAAACCTATAATAATGAGTCGGTTTTTGAAGCAGAAGTTTTAGTTAAGA
TGAGAAATAGAATGAAGCAACGTGCAGAATTATATGAAATGTTAACAGAACGTGAGATGGAAATCTTATTATTAATAGCA
AAAGGCTACTCAAACCAAGAAATAGCAAGCGCCTCACATATAACAATTAAAACTGTTAAAACACATGTAAGTAATATTTT
GAGTAAATTAGAAGTACAAGATAGAACACAAGCTGTTATTTACGCTTTTCAACATAACTTAATTCAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-117)

Bacterial regulatory proteins, luxR family (GerE)

(147-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

88.517

100

0.885
  degU Bacillus subtilis subsp. subtilis str. 168

34.375

100

0.368