NTDB

Overview

Name	ssb	Type	Machinery gene
Locus tag	H7F34_RS17870	Genome accession	NZ_CP060263
Coordinates	3995382..3995930 (+)	Length	182 a.a.
NCBI ID	WP_219951852.1	Uniprot ID	-
Organism	Dickeya zeae strain JZL7
Function	ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	3995382..4006941	3995382..3995930	within	0

Gene organization within MGE regions

Location: 3995382..4006941

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H7F34_RS17870	ssb	3995382..3995930 (+)	549	WP_219951852.1	single-stranded DNA-binding protein SSB1	Machinery gene
H7F34_RS17875	-	3996037..3996234 (+)	198	WP_258235572.1	hypothetical protein	-
H7F34_RS17880	-	3996337..3996984 (+)	648	WP_219951854.1	hypothetical protein	-
H7F34_RS17885	-	3997045..3997620 (-)	576	WP_219951855.1	flavin reductase family protein	-
H7F34_RS17890	-	3997663..3998292 (-)	630	WP_219951856.1	NAD-dependent dehydratase	-
H7F34_RS17895	-	3998483..3998971 (+)	489	WP_219951857.1	hypothetical protein	-
H7F34_RS17900	-	3999204..3999785 (+)	582	WP_219951858.1	DUF4255 domain-containing protein	-
H7F34_RS17905	-	3999782..4000591 (+)	810	WP_219951859.1	hypothetical protein	-
H7F34_RS17910	-	4000720..4002273 (+)	1554	WP_019843445.1	phage tail sheath C-terminal domain-containing protein	-
H7F34_RS17915	-	4002385..4002855 (+)	471	WP_012886094.1	phage tail protein	-
H7F34_RS17920	-	4002962..4003420 (+)	459	WP_253005141.1	phage tail protein	-
H7F34_RS17925	-	4003441..4003641 (+)	201	WP_168361577.1	hypothetical protein	-
H7F34_RS17930	-	4003656..4004303 (+)	648	WP_023640714.1	hypothetical protein	-
H7F34_RS17935	vgrG	4004316..4006106 (+)	1791	WP_219951860.1	type VI secretion system tip protein VgrG	-
H7F34_RS17940	-	4006220..4006519 (+)	300	WP_016940542.1	PAAR domain-containing protein	-
H7F34_RS17945	-	4006522..4006941 (+)	420	WP_219951861.1	GPW/gp25 family protein	-

Sequence

Protein

Download Length: 182 a.a. Molecular weight: 19494.48 Da Isoelectric Point: 5.2440

                                >NTDB_id=474732 H7F34_RS17870 WP_219951852.1 3995382..3995930(+) (ssb) [Dickeya zeae strain JZL7]

MASRGVNKVILIGNLGQDPEVRYMPNGGAVANLTLATSDSWRDKQTGEQKERTEWHRVALYGKLAEIAGEYLRKGSQVYI

EGQLRTRKWQDQGGQDRYTTEVVVDISGSMQMLGGRTGGGAPAGGNMGGNTGGGNAPQGGWGQPQQPQQANQFSGGGQSR

PQQSAPMPSNEPPMDFDDDIPF

Nucleotide

Download Length: 549 bp

                                >NTDB_id=474732 H7F34_RS17870 WP_219951852.1 3995382..3995930(+) (ssb) [Dickeya zeae strain JZL7]

ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTATCGGGAATCTGGGTCAGGACCCGGAAGTCCGTTACATGCCGAATGG

CGGCGCAGTCGCTAACCTGACTCTGGCCACGTCGGACAGCTGGCGCGACAAGCAGACCGGCGAGCAGAAAGAGCGTACTG

AGTGGCACCGCGTCGCACTGTACGGCAAGCTGGCGGAAATCGCCGGTGAGTACCTGCGCAAAGGCTCTCAGGTGTATATT

GAAGGTCAGTTGCGTACCCGTAAATGGCAGGATCAAGGCGGCCAGGATCGCTACACCACTGAAGTGGTGGTCGATATCTC

CGGCAGCATGCAAATGCTGGGCGGCCGTACCGGCGGCGGCGCACCTGCTGGTGGCAACATGGGCGGCAATACGGGTGGTG

GTAACGCGCCACAAGGTGGTTGGGGTCAACCGCAACAGCCGCAGCAAGCCAACCAGTTCAGCGGTGGCGGCCAGTCCCGT

CCGCAGCAAAGCGCCCCGATGCCGAGCAACGAACCGCCGATGGATTTTGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ssb	Vibrio cholerae strain A1552	73.656	100	0.753
ssb	Glaesserella parasuis strain SC1401	55.319	100	0.571
ssb	Neisseria meningitidis MC58	45.503	100	0.473
ssb	Neisseria gonorrhoeae MS11	45.503	100	0.473

Detailed information NTG0474732