Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JGUZn3_RS10855 Genome accession   NZ_CP060244
Coordinates   2407721..2408215 (-) Length   164 a.a.
NCBI ID   WP_203413525.1    Uniprot ID   A0A7H1NU95
Organism   Entomobacter blattae strain G55GP     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2402721..2413215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGUZn3_RS10840 (JGUZn3_21500) - 2403500..2403985 (-) 486 WP_203413524.1 peptidylprolyl isomerase -
  JGUZn3_RS10845 (JGUZn3_21510) coaD 2404092..2404643 (-) 552 WP_238996813.1 pantetheine-phosphate adenylyltransferase -
  JGUZn3_RS10850 (JGUZn3_21520) gyrA 2404647..2407394 (-) 2748 WP_203414917.1 DNA gyrase subunit A -
  JGUZn3_RS10855 (JGUZn3_21530) ssb 2407721..2408215 (-) 495 WP_203413525.1 single-stranded DNA-binding protein Machinery gene
  JGUZn3_RS10860 (JGUZn3_21540) uvrA 2408440..2411304 (+) 2865 WP_203413526.1 excinuclease ABC subunit UvrA -
  JGUZn3_RS10865 (JGUZn3_21550) - 2411517..2412383 (+) 867 WP_203413527.1 NAD(P)-dependent oxidoreductase -
  JGUZn3_RS12520 - 2412698..2412841 (+) 144 Protein_2136 sensor N-terminal transmembrane domain-containing protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18364.32 Da        Isoelectric Point: 4.9326

>NTDB_id=474721 JGUZn3_RS10855 WP_203413525.1 2407721..2408215(-) (ssb) [Entomobacter blattae strain G55GP]
MAGSVNKVILVGNLGRDPEVRTGQSGARIVTFSVATSDTWNDRSSGERRERTEWHKVVIFNERLGDVAEKYLKKGRKVYI
EGSLQTRKWADQSGVERYTTEIIIDRFRGELVLIDSQRGGEADMEEGYNPPRQIESSSSTRNQGGSGWEPAPMGGQDLDD
EIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=474721 JGUZn3_RS10855 WP_203413525.1 2407721..2408215(-) (ssb) [Entomobacter blattae strain G55GP]
ATGGCCGGTAGTGTGAACAAGGTAATTCTGGTAGGGAACCTGGGGCGAGACCCAGAGGTAAGAACAGGTCAGAGTGGCGC
AAGGATTGTGACCTTTTCTGTGGCCACCAGCGATACTTGGAATGATCGTTCATCGGGCGAGCGCAGGGAGCGCACAGAGT
GGCACAAGGTTGTTATTTTTAATGAACGTCTAGGCGATGTCGCTGAGAAATATCTTAAAAAAGGGCGCAAGGTTTATATA
GAAGGTAGCTTACAGACCAGGAAATGGGCAGACCAAAGCGGGGTAGAGCGTTATACTACTGAGATCATTATCGATCGTTT
CCGTGGCGAGCTGGTTCTTATTGATAGCCAACGAGGAGGGGAGGCCGATATGGAGGAGGGTTATAATCCTCCCCGCCAGA
TTGAAAGTTCTTCATCAACGCGGAACCAGGGTGGTTCTGGCTGGGAGCCAGCTCCCATGGGGGGACAGGATCTTGACGAT
GAGATCCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H1NU95

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

44.086

100

0.5
  ssb Vibrio cholerae strain A1552

42.373

100

0.457
  ssb Neisseria meningitidis MC58

40.113

100

0.433
  ssb Neisseria gonorrhoeae MS11

38.122

100

0.421