Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   H7F27_RS03255 Genome accession   NZ_CP060193
Coordinates   662034..662756 (+) Length   240 a.a.
NCBI ID   WP_024123027.1    Uniprot ID   A0A9Q4EKM1
Organism   Bacillus sp. PAMC26543     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 657034..667756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7F27_RS03230 (H7F27_03230) degS 657345..658502 (+) 1158 WP_024123030.1 two-component sensor histidine kinase DegS Regulator
  H7F27_RS03235 (H7F27_03235) degU 658585..659274 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  H7F27_RS03240 (H7F27_03240) - 659371..660216 (+) 846 WP_101859865.1 DegV family protein -
  H7F27_RS03245 (H7F27_03245) comFA 660323..661717 (+) 1395 WP_185848557.1 ATP-dependent helicase ComFA Machinery gene
  H7F27_RS03250 (H7F27_03250) - 661774..662070 (+) 297 WP_103671256.1 late competence development ComFB family protein -
  H7F27_RS03255 (H7F27_03255) comFC 662034..662756 (+) 723 WP_024123027.1 amidophosphoribosyltransferase Machinery gene
  H7F27_RS03260 (H7F27_03260) - 662830..663249 (+) 420 WP_024123026.1 TIGR03826 family flagellar region protein -
  H7F27_RS03265 (H7F27_03265) flgM 663329..663595 (+) 267 WP_185848558.1 flagellar biosynthesis anti-sigma factor FlgM -
  H7F27_RS03270 (H7F27_03270) flgN 663611..664093 (+) 483 WP_185848559.1 flagellar protein FlgN -
  H7F27_RS03275 (H7F27_03275) flgK 664112..665635 (+) 1524 WP_101864690.1 flagellar hook-associated protein FlgK -
  H7F27_RS03280 (H7F27_03280) flgL 665645..666541 (+) 897 WP_095712912.1 flagellar hook-associated protein FlgL -
  H7F27_RS03285 (H7F27_03285) - 666588..667163 (+) 576 WP_185848560.1 DUF6470 family protein -
  H7F27_RS03290 (H7F27_03290) fliW 667184..667615 (+) 432 WP_185848561.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27023.24 Da        Isoelectric Point: 8.6986

>NTDB_id=474481 H7F27_RS03255 WP_024123027.1 662034..662756(+) (comFC) [Bacillus sp. PAMC26543]
MRNETGGGSKKLICLLCDSQFSQAVSWCSLFLLKPDDRVCQSCRNKLQIIKGAICPLCGRPQTAHEVCADCEAWKSRIDD
GLRLSQNRSVYLYNDMMKETLARMKFRGDAAIISAFKNDFSSEFSAVYPDKRLVLVPIPLSEERKAERGFNQSQMLAECL
NRPILNPLIRLNNEKQSKKKKTERLLSEHVFETKNSSVEGMDIVLIDDLYTTGATLHYAARCLLEKGKAGSVSSFTLVRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=474481 H7F27_RS03255 WP_024123027.1 662034..662756(+) (comFC) [Bacillus sp. PAMC26543]
ATGCGAAACGAGACAGGAGGAGGCTCTAAAAAACTGATCTGTCTATTATGTGATTCACAATTTTCTCAAGCTGTTTCATG
GTGCTCACTATTCTTATTAAAACCTGACGACAGGGTCTGTCAGTCCTGCAGAAACAAATTACAGATCATCAAAGGGGCCA
TCTGTCCGCTTTGCGGCAGGCCTCAAACCGCTCATGAAGTGTGTGCGGATTGCGAGGCATGGAAATCAAGAATAGATGAC
GGCTTAAGGCTCAGTCAAAACCGTTCTGTTTACTTATATAATGACATGATGAAAGAAACGCTCGCCCGAATGAAATTCAG
GGGAGATGCAGCGATAATAAGCGCTTTTAAAAATGACTTTTCCTCAGAATTCTCTGCTGTCTATCCAGATAAACGCCTTG
TGCTCGTTCCCATTCCGTTAAGCGAAGAACGGAAAGCAGAACGCGGCTTTAACCAGTCACAAATGCTTGCTGAATGCTTA
AACCGGCCCATCCTCAATCCTCTCATCCGCCTGAATAATGAAAAGCAGTCTAAGAAAAAGAAAACGGAGCGCCTGCTTTC
AGAGCATGTTTTTGAAACAAAAAACAGCTCGGTTGAGGGTATGGATATCGTTTTAATCGACGATCTTTATACTACGGGCG
CCACTTTGCACTATGCTGCCCGCTGTTTATTGGAGAAAGGCAAAGCTGGTTCAGTGTCATCTTTTACCTTAGTGAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)

Phosphoribosyl transferase domain (Pribosyltran)

(184-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

76.25

100

0.763