Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   H7F27_RS03245 Genome accession   NZ_CP060193
Coordinates   660323..661717 (+) Length   464 a.a.
NCBI ID   WP_185848557.1    Uniprot ID   A0A7G7UF06
Organism   Bacillus sp. PAMC26543     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 655323..666717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7F27_RS03225 (H7F27_03225) - 656475..657128 (-) 654 WP_101859864.1 YigZ family protein -
  H7F27_RS03230 (H7F27_03230) degS 657345..658502 (+) 1158 WP_024123030.1 two-component sensor histidine kinase DegS Regulator
  H7F27_RS03235 (H7F27_03235) degU 658585..659274 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  H7F27_RS03240 (H7F27_03240) - 659371..660216 (+) 846 WP_101859865.1 DegV family protein -
  H7F27_RS03245 (H7F27_03245) comFA 660323..661717 (+) 1395 WP_185848557.1 ATP-dependent helicase ComFA Machinery gene
  H7F27_RS03250 (H7F27_03250) - 661774..662070 (+) 297 WP_103671256.1 late competence development ComFB family protein -
  H7F27_RS03255 (H7F27_03255) comFC 662034..662756 (+) 723 WP_024123027.1 amidophosphoribosyltransferase Machinery gene
  H7F27_RS03260 (H7F27_03260) - 662830..663249 (+) 420 WP_024123026.1 TIGR03826 family flagellar region protein -
  H7F27_RS03265 (H7F27_03265) flgM 663329..663595 (+) 267 WP_185848558.1 flagellar biosynthesis anti-sigma factor FlgM -
  H7F27_RS03270 (H7F27_03270) flgN 663611..664093 (+) 483 WP_185848559.1 flagellar protein FlgN -
  H7F27_RS03275 (H7F27_03275) flgK 664112..665635 (+) 1524 WP_101864690.1 flagellar hook-associated protein FlgK -
  H7F27_RS03280 (H7F27_03280) flgL 665645..666541 (+) 897 WP_095712912.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 52959.08 Da        Isoelectric Point: 9.7878

>NTDB_id=474480 H7F27_RS03245 WP_185848557.1 660323..661717(+) (comFA) [Bacillus sp. PAMC26543]
MQTKTSKSNSLFSKELQQQLQGRHLLRTEIPFSDEIIDWHIEHGYISAEESISKNKWGYRCNRCGQNDQQYFSSYHSSGE
DKVYCRSCVMMGRVSEDISLYSWCKEAEANWKPIKLTWDGKLSSGQQKAADVLIEAISKQEELLIWAVCGAGKTELLFQG
IESALNLRLRVCIATPRTDVVLELAPRLKAAFQGADISVLYGGSDDKGRLSPLMISTTHQLLRYKDAFDVMIVDEVDAFP
YSADQTLQFAVQKARKKNSTLVYLSATPPKELKRKTYKGELKSVRIPARYHRKPLPEPRFQWCGNWKKKLIRNKIPNAVK
RWIEQHVKEGRPVFLFVPSISILEKAASCFKNMNYRTASVHAEDKLRKEKVQQFRDGQFDLLITTTILERGVTVPMVQTG
ILGAESPIFTESALVQIAGRTGRHKEHADGDVIYFHFGKTKSMIEARKHIKIMNELALKNKLID

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=474480 H7F27_RS03245 WP_185848557.1 660323..661717(+) (comFA) [Bacillus sp. PAMC26543]
ATGCAGACTAAGACATCAAAATCGAACAGCCTATTCTCTAAAGAACTGCAGCAGCAGCTTCAGGGCCGTCATCTGCTTAG
AACAGAAATCCCATTTTCTGACGAGATCATTGATTGGCATATCGAGCATGGTTATATATCTGCCGAGGAGTCTATATCAA
AAAATAAATGGGGATATAGATGCAATAGATGCGGTCAAAATGATCAACAGTATTTTTCTTCGTATCATTCATCAGGAGAA
GATAAAGTATACTGCCGCTCTTGTGTCATGATGGGCAGAGTGAGTGAGGATATTTCTTTATATTCCTGGTGCAAGGAGGC
AGAGGCAAACTGGAAGCCTATAAAACTGACTTGGGATGGAAAGCTGTCAAGCGGACAGCAAAAGGCCGCTGACGTCTTAA
TTGAAGCAATTTCGAAGCAAGAAGAGCTCCTTATTTGGGCTGTTTGCGGCGCAGGTAAAACTGAATTATTATTCCAAGGT
ATAGAATCGGCATTAAATCTAAGACTGCGTGTTTGTATTGCGACCCCGCGCACCGATGTTGTATTAGAGCTTGCTCCGAG
ACTGAAGGCTGCATTTCAGGGTGCTGATATTTCAGTTCTATACGGAGGAAGTGATGACAAAGGGCGTTTATCTCCGCTTA
TGATTTCCACAACCCATCAGCTTTTGCGCTATAAAGACGCATTCGACGTCATGATCGTTGATGAAGTGGATGCTTTTCCA
TATTCCGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCGAGAAAGAAAAACAGTACGCTTGTTTATCTAAGCGCCAC
ACCTCCTAAAGAATTAAAAAGAAAAACATATAAAGGTGAGTTGAAGTCCGTTCGCATACCGGCCAGATACCACCGGAAGC
CGTTGCCTGAACCGCGCTTTCAATGGTGCGGAAACTGGAAAAAGAAATTAATCCGAAATAAGATCCCAAATGCGGTAAAA
AGATGGATAGAACAGCATGTAAAAGAAGGAAGGCCCGTTTTTTTATTTGTTCCGTCCATTTCTATTCTGGAAAAGGCTGC
TTCTTGTTTTAAAAATATGAATTATCGAACAGCGTCTGTACATGCGGAAGACAAGCTCAGAAAAGAAAAAGTGCAGCAAT
TTCGAGACGGTCAGTTTGATCTGTTAATCACAACAACAATATTGGAAAGAGGTGTCACAGTTCCTATGGTCCAAACAGGC
ATCTTAGGGGCAGAATCGCCCATCTTTACGGAAAGCGCGCTTGTGCAAATCGCGGGAAGGACAGGACGGCATAAAGAACA
TGCAGACGGCGATGTCATTTATTTTCACTTCGGAAAAACAAAGAGTATGATAGAGGCAAGAAAACATATAAAAATAATGA
ATGAATTGGCTTTAAAAAATAAATTGATAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(121-269)

Helicase conserved C-terminal domain (Helicase_C)

(323-424)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G7UF06

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

85.088

98.276

0.836