Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   H7F27_RS03235 Genome accession   NZ_CP060193
Coordinates   658585..659274 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus sp. PAMC26543     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 653585..664274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7F27_RS03215 (H7F27_03215) - 654145..655221 (+) 1077 WP_010332075.1 glycosyltransferase family 4 protein -
  H7F27_RS03220 (H7F27_03220) - 655297..656475 (-) 1179 WP_185848556.1 LCP family protein -
  H7F27_RS03225 (H7F27_03225) - 656475..657128 (-) 654 WP_101859864.1 YigZ family protein -
  H7F27_RS03230 (H7F27_03230) degS 657345..658502 (+) 1158 WP_024123030.1 two-component sensor histidine kinase DegS Regulator
  H7F27_RS03235 (H7F27_03235) degU 658585..659274 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  H7F27_RS03240 (H7F27_03240) - 659371..660216 (+) 846 WP_101859865.1 DegV family protein -
  H7F27_RS03245 (H7F27_03245) comFA 660323..661717 (+) 1395 WP_185848557.1 ATP-dependent helicase ComFA Machinery gene
  H7F27_RS03250 (H7F27_03250) - 661774..662070 (+) 297 WP_103671256.1 late competence development ComFB family protein -
  H7F27_RS03255 (H7F27_03255) comFC 662034..662756 (+) 723 WP_024123027.1 amidophosphoribosyltransferase Machinery gene
  H7F27_RS03260 (H7F27_03260) - 662830..663249 (+) 420 WP_024123026.1 TIGR03826 family flagellar region protein -
  H7F27_RS03265 (H7F27_03265) flgM 663329..663595 (+) 267 WP_185848558.1 flagellar biosynthesis anti-sigma factor FlgM -
  H7F27_RS03270 (H7F27_03270) flgN 663611..664093 (+) 483 WP_185848559.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=474479 H7F27_RS03235 WP_003219701.1 658585..659274(+) (degU) [Bacillus sp. PAMC26543]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=474479 H7F27_RS03235 WP_003219701.1 658585..659274(+) (degU) [Bacillus sp. PAMC26543]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAGCGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCGGAAGGAGACGACGGAGATGAAGCGGCTCGTATCGTTGAGCACTATCATCCTGATGTCGTGA
TCATGGATATCAATATGCCGAACGTAAATGGCGTGGAAGCTACAAAGCAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAGAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACACTAATTGAAGCGGTTAAAGTAGTTGCCGAGGGCGGTTCTTACCTTCACCCGAAGGTTACTCACA
ACCTCGTAAACGAATTCCGACGTCTTGCAACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTCTATCCAGAGATTCGC
AGACCATTACATATTTTAACAAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGCATCGG
TGAATCATTGTTTATCAGTGAAAAAACTGTTAAAAACCATGTCAGCAATATCTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTGGTGGTCGCCATTAAAAATGGTTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1