Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   H7F27_RS00300 Genome accession   NZ_CP060193
Coordinates   56739..57257 (+) Length   172 a.a.
NCBI ID   WP_010332657.1    Uniprot ID   A0A9Q6ABZ4
Organism   Bacillus sp. PAMC26543     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 51739..62257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7F27_RS00280 (H7F27_00280) - 52813..53019 (+) 207 WP_185848365.1 DUF951 domain-containing protein -
  H7F27_RS00285 (H7F27_00285) - 53070..55073 (+) 2004 WP_185848366.1 molybdopterin-dependent oxidoreductase -
  H7F27_RS00290 (H7F27_00290) ychF 55200..56300 (+) 1101 WP_101865112.1 redox-regulated ATPase YchF -
  H7F27_RS00295 (H7F27_00295) rpsF 56411..56698 (+) 288 WP_010332658.1 30S ribosomal protein S6 -
  H7F27_RS00300 (H7F27_00300) ssbA 56739..57257 (+) 519 WP_010332657.1 single-stranded DNA-binding protein SsbA Machinery gene
  H7F27_RS00305 (H7F27_00305) rpsR 57300..57539 (+) 240 WP_010332656.1 30S ribosomal protein S18 -
  H7F27_RS00310 (H7F27_00310) xth 57605..58363 (+) 759 WP_185848367.1 exodeoxyribonuclease III -
  H7F27_RS00315 (H7F27_00315) - 58422..59357 (+) 936 WP_185848368.1 LacI family DNA-binding transcriptional regulator -
  H7F27_RS00320 (H7F27_00320) - 59414..59794 (+) 381 WP_059335345.1 VOC family protein -
  H7F27_RS00325 (H7F27_00325) - 59813..60367 (+) 555 WP_059292117.1 maltose acetyltransferase domain-containing protein -
  H7F27_RS00330 (H7F27_00330) - 60398..61750 (-) 1353 WP_185848369.1 MFS transporter -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18715.28 Da        Isoelectric Point: 4.7621

>NTDB_id=474469 H7F27_RS00300 WP_010332657.1 56739..57257(+) (ssbA) [Bacillus sp. PAMC26543]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=474469 H7F27_RS00300 WP_010332657.1 56739..57257(+) (ssbA) [Bacillus sp. PAMC26543]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
CACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCTGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCCTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGGCAGCGTGTCTTCGTGACCGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAG
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTCGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

99.419

100

0.994
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

36.066

100

0.384