Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | XFGV230_RS08295 | Genome accession | NZ_CP060159 |
| Coordinates | 1844201..1844647 (+) | Length | 148 a.a. |
| NCBI ID | WP_004088866.1 | Uniprot ID | Q87B55 |
| Organism | Xylella fastidiosa subsp. fastidiosa strain GV230 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
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Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1836848..1857998 | 1844201..1844647 | within | 0 |
Gene organization within MGE regions
Location: 1836848..1857998
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XFGV230_RS08250 (XFGV230_08250) | - | 1836848..1837363 (-) | 516 | WP_004088839.1 | phage portal protein | - |
| XFGV230_RS11455 | - | 1837360..1837596 (-) | 237 | WP_004088842.1 | hypothetical protein | - |
| XFGV230_RS08260 (XFGV230_08260) | - | 1837673..1839772 (-) | 2100 | WP_004088845.1 | phage terminase large subunit family protein | - |
| XFGV230_RS08265 (XFGV230_08265) | - | 1839769..1840377 (-) | 609 | WP_004088848.1 | hypothetical protein | - |
| XFGV230_RS08270 (XFGV230_08270) | - | 1840774..1842243 (-) | 1470 | WP_146462741.1 | VapE domain-containing protein | - |
| XFGV230_RS08275 (XFGV230_08275) | - | 1842240..1843295 (-) | 1056 | WP_038233149.1 | DNA primase | - |
| XFGV230_RS08280 (XFGV230_08280) | - | 1843294..1843695 (+) | 402 | WP_038233152.1 | hypothetical protein | - |
| XFGV230_RS08285 (XFGV230_08285) | - | 1843797..1843970 (-) | 174 | WP_155115078.1 | hypothetical protein | - |
| XFGV230_RS08290 (XFGV230_08290) | - | 1843945..1844217 (+) | 273 | WP_004088863.1 | DUF5131 family protein | - |
| XFGV230_RS08295 (XFGV230_08295) | ssb | 1844201..1844647 (+) | 447 | WP_004088866.1 | single-stranded DNA-binding protein | Machinery gene |
| XFGV230_RS08300 (XFGV230_08300) | - | 1844666..1844941 (+) | 276 | WP_011098179.1 | hypothetical protein | - |
| XFGV230_RS08305 (XFGV230_08305) | - | 1844941..1846114 (+) | 1174 | Protein_1652 | integrase | - |
| XFGV230_RS08310 (XFGV230_08310) | - | 1846424..1846627 (+) | 204 | WP_004089756.1 | DUF4102 domain-containing protein | - |
| XFGV230_RS08315 (XFGV230_08315) | - | 1846694..1847101 (+) | 408 | WP_012382712.1 | hypothetical protein | - |
| XFGV230_RS11460 | - | 1847302..1847427 (-) | 126 | WP_256626233.1 | hypothetical protein | - |
| XFGV230_RS08320 (XFGV230_08320) | - | 1847581..1849035 (-) | 1455 | WP_004089759.1 | class I SAM-dependent methyltransferase | - |
| XFGV230_RS08325 (XFGV230_08325) | - | 1849032..1849721 (-) | 690 | WP_228446149.1 | restriction endonuclease | - |
| XFGV230_RS11140 | - | 1849796..1850005 (+) | 210 | WP_126709098.1 | hypothetical protein | - |
| XFGV230_RS08335 (XFGV230_08335) | - | 1850239..1850694 (-) | 456 | WP_012382713.1 | type IV pilin protein | - |
| XFGV230_RS08340 (XFGV230_08340) | - | 1850691..1855256 (-) | 4566 | WP_004089764.1 | pilus assembly protein | - |
| XFGV230_RS08345 (XFGV230_08345) | - | 1855260..1855754 (-) | 495 | WP_012382714.1 | PilX N-terminal domain-containing pilus assembly protein | - |
| XFGV230_RS08350 (XFGV230_08350) | - | 1855754..1857010 (-) | 1257 | WP_004089768.1 | PilW family protein | - |
| XFGV230_RS08355 (XFGV230_08355) | pilV | 1857007..1857489 (-) | 483 | WP_004083567.1 | type IV pilus modification protein PilV | - |
| XFGV230_RS08360 (XFGV230_08360) | - | 1857486..1857998 (-) | 513 | WP_004089770.1 | Tfp pilus assembly protein FimT/FimU | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 16607.50 Da Isoelectric Point: 7.3545
>NTDB_id=474217 XFGV230_RS08295 WP_004088866.1 1844201..1844647(+) (ssb) [Xylella fastidiosa subsp. fastidiosa strain GV230]
MARGINKVILVGNLGNEPDIKYTQSGMTITSISLATSSKRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEG
TIRYDKFTGNDGQDRYVTEIIADQMHMLGGRGEGSSGITPQRRPAKVRNNDKAYAYAGDDFHDDDIPF
MARGINKVILVGNLGNEPDIKYTQSGMTITSISLATSSKRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEG
TIRYDKFTGNDGQDRYVTEIIADQMHMLGGRGEGSSGITPQRRPAKVRNNDKAYAYAGDDFHDDDIPF
Nucleotide
Download Length: 447 bp
>NTDB_id=474217 XFGV230_RS08295 WP_004088866.1 1844201..1844647(+) (ssb) [Xylella fastidiosa subsp. fastidiosa strain GV230]
ATGGCACGCGGAATTAACAAGGTGATCCTAGTCGGAAACCTGGGAAACGAGCCAGATATTAAATACACCCAAAGCGGCAT
GACGATCACCAGTATTAGCCTAGCGACCAGCAGCAAACGCAAGGACAGAGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACCGCGTCAAGTTTTTCGGAAAGCTGGGCGAGATTGCCGCTGAATATCTGCACAAGGGATCGCAGTGCTACATAGAGGGC
ACCATCCGTTACGACAAATTCACCGGCAATGATGGGCAGGACCGTTATGTCACTGAGATTATTGCTGACCAAATGCACAT
GCTCGGCGGTCGCGGCGAAGGCTCCAGCGGCATCACGCCACAGCGACGACCGGCAAAGGTCCGTAACAACGATAAAGCCT
ATGCGTATGCAGGCGACGACTTCCACGATGACGACATCCCGTTCTAG
ATGGCACGCGGAATTAACAAGGTGATCCTAGTCGGAAACCTGGGAAACGAGCCAGATATTAAATACACCCAAAGCGGCAT
GACGATCACCAGTATTAGCCTAGCGACCAGCAGCAAACGCAAGGACAGAGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACCGCGTCAAGTTTTTCGGAAAGCTGGGCGAGATTGCCGCTGAATATCTGCACAAGGGATCGCAGTGCTACATAGAGGGC
ACCATCCGTTACGACAAATTCACCGGCAATGATGGGCAGGACCGTTATGTCACTGAGATTATTGCTGACCAAATGCACAT
GCTCGGCGGTCGCGGCGAAGGCTCCAGCGGCATCACGCCACAGCGACGACCGGCAAAGGTCCGTAACAACGATAAAGCCT
ATGCGTATGCAGGCGACGACTTCCACGATGACGACATCCCGTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
40.909 |
100 |
0.486 |
| ssb | Neisseria meningitidis MC58 |
38.15 |
100 |
0.446 |
| ssb | Neisseria gonorrhoeae MS11 |
38.15 |
100 |
0.446 |
| ssb | Glaesserella parasuis strain SC1401 |
42.029 |
93.243 |
0.392 |