Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   H5647_RS09770 Genome accession   NZ_CP060092
Coordinates   2257114..2257962 (-) Length   282 a.a.
NCBI ID   WP_236075052.1    Uniprot ID   -
Organism   Teredinibacter purpureus strain Bs12     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2252114..2262962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5647_RS09750 argJ 2254686..2255906 (+) 1221 WP_045858165.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  H5647_RS09755 mutT 2255907..2256314 (+) 408 WP_045858166.1 8-oxo-dGTP diphosphatase MutT -
  H5647_RS09760 yacG 2256329..2256523 (-) 195 WP_045858168.1 DNA gyrase inhibitor YacG -
  H5647_RS09765 coaE 2256520..2257110 (-) 591 WP_045858169.1 dephospho-CoA kinase -
  H5647_RS09770 pilD 2257114..2257962 (-) 849 WP_236075052.1 A24 family peptidase Machinery gene
  H5647_RS09775 pilC 2258004..2259230 (-) 1227 WP_045858173.1 type II secretion system F family protein Machinery gene
  H5647_RS09780 pilB 2259236..2260960 (-) 1725 WP_045858175.1 type IV-A pilus assembly ATPase PilB Machinery gene
  H5647_RS09785 - 2261376..2261816 (+) 441 WP_045858177.1 pilin -

Sequence

Protein


Download         Length: 282 a.a.        Molecular weight: 30995.70 Da        Isoelectric Point: 6.3133

>NTDB_id=473925 H5647_RS09770 WP_236075052.1 2257114..2257962(-) (pilD) [Teredinibacter purpureus strain Bs12]
MLSLAGTLIVSLAIGSFLNVVIYRLPLSMFAQWKAECKEFLNDHPDNGNEVDTQFNIAFPSSHCPSCKAPIRAWQNIPVF
SYLILKGRCHSCNTSISIRYPIVEMVTGILSVFCIFSLGLNESGGFALLFTWCLIALTMIDIDHQLLPDSITLPLMWGGI
VVNSFGIFTDIHSAVYGAIAGYLVLWCVFWLFKLITGKEGMGFGDFKLLAALGAWMGWQMLPLIIILSSFVGAVIGIAGI
VIAGRDKNVPIPFGPYLAIAGWMAFFWGESITEIYLSYAKIS

Nucleotide


Download         Length: 849 bp        

>NTDB_id=473925 H5647_RS09770 WP_236075052.1 2257114..2257962(-) (pilD) [Teredinibacter purpureus strain Bs12]
ATGTTATCGCTCGCAGGCACTTTAATTGTTAGCCTAGCCATCGGTAGTTTTTTGAATGTTGTCATCTATCGTTTACCTCT
TTCGATGTTTGCTCAATGGAAAGCCGAGTGCAAAGAGTTTTTAAACGATCATCCCGATAACGGAAACGAGGTGGACACCC
AGTTTAATATCGCCTTTCCGTCTTCGCATTGCCCTTCCTGTAAGGCACCTATTCGGGCCTGGCAAAATATACCCGTATTC
AGTTATCTAATACTTAAAGGGCGCTGCCATAGTTGCAATACCTCCATTTCCATTCGGTACCCCATTGTAGAAATGGTTAC
CGGCATACTGTCCGTGTTTTGTATTTTCTCTTTGGGTCTCAACGAAAGTGGTGGCTTCGCTCTTTTGTTTACTTGGTGTC
TTATCGCCCTTACGATGATAGATATCGATCACCAGCTATTACCAGACAGCATTACCCTACCCCTAATGTGGGGCGGTATT
GTCGTAAACTCCTTTGGAATATTTACAGATATACACAGCGCCGTTTACGGGGCAATTGCAGGCTACTTGGTTTTATGGTG
TGTTTTCTGGCTGTTTAAACTAATAACAGGTAAAGAAGGCATGGGCTTTGGCGACTTCAAATTGCTCGCGGCGCTTGGCG
CTTGGATGGGCTGGCAAATGCTGCCACTCATCATCATTCTGTCGTCTTTTGTCGGTGCGGTTATTGGTATTGCCGGAATC
GTTATTGCGGGCCGAGATAAAAATGTGCCAATTCCTTTTGGCCCTTATTTAGCAATTGCCGGCTGGATGGCCTTTTTTTG
GGGTGAAAGCATTACCGAAATATACCTTAGCTACGCAAAAATTAGCTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(129-237)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

53.731

95.035

0.511
  pilD Acinetobacter nosocomialis M2

53.358

95.035

0.507
  pilD Vibrio campbellii strain DS40M4

48.708

96.099

0.468
  pilD Vibrio cholerae strain A1552

47.636

97.518

0.465
  pilD Neisseria gonorrhoeae MS11

49.049

93.262

0.457