Detailed information NTG0473926

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: H5647_RS09775
• Genome accession: NZ_CP060092
• Coordinates: 2258004..2259230 (-)
• Length: 408 a.a.
• NCBI ID: WP_045858173.1
• Uniprot ID: -
• Organism: Teredinibacter purpureus strain Bs12
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2253004..2264230

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H5647_RS09750	argJ	2254686..2255906 (+)	1221	WP_045858165.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
H5647_RS09755	mutT	2255907..2256314 (+)	408	WP_045858166.1	8-oxo-dGTP diphosphatase MutT	-
H5647_RS09760	yacG	2256329..2256523 (-)	195	WP_045858168.1	DNA gyrase inhibitor YacG	-
H5647_RS09765	coaE	2256520..2257110 (-)	591	WP_045858169.1	dephospho-CoA kinase	-
H5647_RS09770	pilD	2257114..2257962 (-)	849	WP_236075052.1	A24 family peptidase	Machinery gene
H5647_RS09775	pilC	2258004..2259230 (-)	1227	WP_045858173.1	type II secretion system F family protein	Machinery gene
H5647_RS09780	pilB	2259236..2260960 (-)	1725	WP_045858175.1	type IV-A pilus assembly ATPase PilB	Machinery gene
H5647_RS09785	-	2261376..2261816 (+)	441	WP_045858177.1	pilin	-
H5647_RS09790	-	2261913..2263820 (+)	1908	WP_162926350.1	M48 family metallopeptidase	-

Sequence

Protein

• Length: 408 a.a.
• Molecular weight: 43856.45 Da
• Isoelectric Point: 9.7071

>NTDB_id=473926 H5647_RS09775 WP_045858173.1 2258004..2259230(-) (pilC) [Teredinibacter purpureus strain Bs12]
MATTAHSTTTEVFSYKGVDKKGNKVTGEVVSPSSSLAKAQLLKQGVRTNSVRRKSKPMFGGGGKPIKPMDIALFTRQMAT
MMKAGVPLVQSFEIVAGGSENKNLAKLIRGIKDDVAAGGGFAASLRKQPKYFDELFCNLVESGEQSGALETMLDRIAIYK
EKTEQLKAKIKKAMTYPIAVVIVALVVTGILLVKVVPQFAETFSSFGAELPAFTLFVLHLSEAAQAYWHIIGAALIASVF
FLGKLKQKSQTFRNFIDRLMLKIPVVGGIVYQSIIARFARTLSTTFAAGVPLIDALQSVAGATGNSLYEAAVLRIKDEVS
TGTQLNAAITNTHLFPAMLVQMTTIGEESGALDEMLDKVASYYEEAVDNLVDSLTSLLEPIIMSVLGVLVGGLMIAMYLP
IFQIGQVV

Nucleotide

• Length: 1227 bp

>NTDB_id=473926 H5647_RS09775 WP_045858173.1 2258004..2259230(-) (pilC) [Teredinibacter purpureus strain Bs12]
ATGGCAACAACAGCCCACTCCACAACTACAGAAGTATTCTCCTACAAGGGCGTAGACAAAAAAGGCAACAAGGTTACCGG
CGAAGTTGTCAGCCCAAGTTCCTCCCTCGCTAAAGCTCAGCTACTGAAGCAAGGGGTAAGAACTAATAGTGTACGGCGCA
AATCAAAACCAATGTTCGGTGGCGGAGGCAAACCCATCAAACCCATGGATATTGCGCTTTTTACTCGACAAATGGCTACG
ATGATGAAGGCAGGCGTACCCTTAGTTCAAAGCTTTGAAATAGTCGCCGGCGGCAGCGAAAATAAAAACCTAGCCAAACT
TATTCGTGGCATCAAAGACGATGTTGCTGCCGGAGGGGGCTTTGCCGCCTCACTACGAAAGCAGCCAAAATATTTTGATG
AGCTTTTCTGTAATCTTGTCGAATCGGGAGAGCAGTCTGGCGCCCTAGAAACAATGCTTGACCGGATTGCAATTTATAAA
GAAAAAACCGAACAGTTAAAAGCGAAAATAAAAAAGGCAATGACCTATCCAATTGCTGTTGTAATTGTCGCCCTTGTTGT
TACCGGTATATTATTAGTTAAAGTGGTCCCGCAATTTGCCGAAACTTTTAGCAGTTTTGGCGCAGAACTTCCGGCATTTA
CGCTTTTCGTATTACATCTTTCGGAAGCAGCTCAGGCGTACTGGCATATTATTGGGGCAGCATTAATCGCCAGCGTGTTT
TTTTTGGGGAAACTAAAACAAAAAAGCCAAACTTTTCGAAACTTCATTGATCGCCTTATGCTGAAAATCCCCGTTGTCGG
CGGAATTGTGTACCAGTCAATCATCGCGCGATTCGCTCGAACACTTTCAACAACATTTGCTGCGGGCGTGCCCTTAATTG
ACGCATTACAATCAGTCGCTGGAGCAACAGGAAACTCTTTATACGAAGCCGCAGTACTTCGAATAAAAGATGAAGTATCT
ACCGGTACGCAATTAAATGCGGCCATCACTAACACCCATTTATTTCCGGCAATGCTCGTACAAATGACAACTATCGGCGA
GGAATCAGGTGCTCTCGATGAAATGCTGGATAAAGTCGCTAGCTATTATGAAGAGGCTGTAGATAATTTAGTTGATAGCT
TAACCTCCCTACTAGAACCCATTATCATGTCCGTACTAGGTGTTTTAGTCGGTGGCTTGATGATCGCGATGTACCTACCC
ATATTTCAGATCGGGCAGGTTGTTTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (74-197)

• Type II secretion system (T2SS), protein F (T2SSF) (278-400)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	63.91	97.794	0.625
pilC	Acinetobacter baylyi ADP1	59.296	97.549	0.578
pilC	Acinetobacter baumannii D1279779	59.194	97.304	0.576
pilC	Legionella pneumophila strain ERS1305867	57.071	97.059	0.554
pilG	Neisseria meningitidis 44/76-A	41.562	97.304	0.404
pilG	Neisseria gonorrhoeae MS11	41.562	97.304	0.404
pilC	Vibrio cholerae strain A1552	40.404	97.059	0.392
pilC	Vibrio campbellii strain DS40M4	38.539	97.304	0.375