Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   H5404_RS22200 Genome accession   NZ_CP060088
Coordinates   3057400..3058044 (+) Length   214 a.a.
NCBI ID   WP_005480993.1    Uniprot ID   Q87LA2
Organism   Vibrio parahaemolyticus strain TJA114     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3052400..3063044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5404_RS22185 (H5404_22185) - 3052884..3054329 (-) 1446 WP_077671976.1 MSHA biogenesis protein MshI -
  H5404_RS22190 (H5404_22190) csrD 3054341..3056350 (-) 2010 WP_011106082.1 RNase E specificity factor CsrD -
  H5404_RS22195 (H5404_22195) ssb 3056591..3057121 (-) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  H5404_RS22200 (H5404_22200) qstR 3057400..3058044 (+) 645 WP_005480993.1 LuxR C-terminal-related transcriptional regulator Regulator
  H5404_RS22205 (H5404_22205) galU 3058302..3059174 (+) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  H5404_RS22210 (H5404_22210) uvrA 3059312..3062134 (+) 2823 WP_043044596.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24386.20 Da        Isoelectric Point: 8.7760

>NTDB_id=473905 H5404_RS22200 WP_005480993.1 3057400..3058044(+) (qstR) [Vibrio parahaemolyticus strain TJA114]
MRKSAYARKLFLISMEDDAAQKVASLEKYIDMSIPVISTDALMEAKPEHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLAFGQLKGLFYSEDSLEQVGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=473905 H5404_RS22200 WP_005480993.1 3057400..3058044(+) (qstR) [Vibrio parahaemolyticus strain TJA114]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATTAGTATGGAAGACGATGCTGCGCAAAAAGTCGCATCATTAGA
AAAGTACATCGATATGAGCATTCCTGTAATCTCAACCGATGCCCTAATGGAAGCGAAACCCGAACATCGAAATAAAATTC
TACTCATTGACTTCAGTGAACATAAATCACTCGTTCAATCGATTAAAAACCTACCATTGGTTTGGAAGAACTTTGAGACG
GTCGTGTTCAACGTTCCAAAGCGCCTCACTACGGATGAACTGCTCGCCTTCGGTCAATTAAAAGGCTTGTTTTACAGCGA
AGATTCTTTAGAACAAGTCGGCGAAGGACTGAAAGGTATTGTCAACGGGCAAAACTGGCTACCACGCAACGTAACCAGCC
AACTGCTGCACTACTATCGAAATGTGATAAATACTCACACCGCGCCAGCAACCGTCGATCTCACCATTCGTGAACTGCAA
GTGCTGCGTTGTCTGCAAGCAGGGGCATCGAATAGCCAGATGGCAGAAGAACTGTTTGTTAGCGAATTTACGATCAAGTC
GCACCTGTATCAGATCTTTAAAAAGCTCTCAGTGAAAAACCGAGTTCAAGCCATTGCTTGGGCCGATCAAAACTTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

52.093

100

0.523