Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H5715_RS01165 Genome accession   NZ_CP060084
Coordinates   286201..286719 (+) Length   172 a.a.
NCBI ID   WP_075185970.1    Uniprot ID   -
Organism   Teredinibacter haidensis strain Bs08     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 281201..291719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5715_RS01155 - 283744..284406 (-) 663 WP_075185971.1 LuxR C-terminal-related transcriptional regulator -
  H5715_RS01160 - 284841..286115 (+) 1275 WP_246434647.1 MFS transporter -
  H5715_RS01165 ssb 286201..286719 (+) 519 WP_075185970.1 single-stranded DNA-binding protein Machinery gene
  H5715_RS01170 - 286765..287643 (+) 879 WP_075185969.1 sugar nucleotide-binding protein -
  H5715_RS01175 fabB 287714..288928 (-) 1215 WP_075185968.1 beta-ketoacyl-ACP synthase I -
  H5715_RS01180 fabA 288997..289521 (-) 525 WP_075185967.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -
  H5715_RS01185 galU 289804..290631 (+) 828 WP_075185966.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18528.48 Da        Isoelectric Point: 5.7710

>NTDB_id=473741 H5715_RS01165 WP_075185970.1 286201..286719(+) (ssb) [Teredinibacter haidensis strain Bs08]
MASRGVNKVILVGNCGQDPETKYMPTGGAVTNISVATSETWKDKQTGQPQERTEWHRVVFFNRLAEIAGEYLRKGSKVYV
EGALRTRKWQGQDGQDRYTTEIVANEMQMLDTRSAGEGQASGGGYQQAPAASQPQRVPAPASAPSQSTAPAQSSHAAAPP
PAMDSFDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=473741 H5715_RS01165 WP_075185970.1 286201..286719(+) (ssb) [Teredinibacter haidensis strain Bs08]
GTGGCCAGTAGAGGCGTCAATAAAGTTATCCTGGTTGGAAATTGCGGCCAGGACCCAGAAACCAAATATATGCCGACTGG
TGGTGCTGTCACCAATATCAGCGTTGCAACGTCCGAAACCTGGAAAGATAAGCAGACTGGTCAGCCGCAAGAGCGTACCG
AGTGGCATCGCGTTGTGTTTTTTAACCGCCTAGCGGAGATTGCCGGCGAGTACCTACGCAAGGGTAGTAAGGTTTATGTT
GAAGGGGCCCTGCGTACGCGCAAGTGGCAGGGGCAGGATGGACAAGACCGCTACACTACTGAAATTGTCGCTAACGAAAT
GCAAATGCTCGATACTCGTTCTGCAGGGGAAGGTCAGGCATCTGGCGGCGGTTATCAGCAGGCGCCCGCAGCTTCTCAGC
CCCAACGAGTTCCAGCTCCGGCTTCAGCGCCGTCCCAATCGACCGCTCCAGCACAAAGCTCTCATGCGGCGGCGCCACCG
CCGGCGATGGATAGTTTCGACGACGACATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.61
  ssb Glaesserella parasuis strain SC1401

55.866

100

0.581
  ssb Neisseria gonorrhoeae MS11

50.568

100

0.517
  ssb Neisseria meningitidis MC58

50

100

0.512