Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   H6S61_RS13485 Genome accession   NZ_CP060047
Coordinates   2756654..2756956 (+) Length   100 a.a.
NCBI ID   WP_185890779.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 2497-87     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2751654..2761956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H6S61_RS13470 (H6S61_13470) lon 2751668..2754019 (+) 2352 WP_185890774.1 endopeptidase La -
  H6S61_RS13475 (H6S61_13475) - 2754213..2754485 (+) 273 WP_013572181.1 HU family DNA-binding protein -
  H6S61_RS13480 (H6S61_13480) ppiD 2754662..2756521 (+) 1860 WP_185890776.1 peptidylprolyl isomerase -
  H6S61_RS13485 (H6S61_13485) comEA 2756654..2756956 (+) 303 WP_185890779.1 helix-hairpin-helix domain-containing protein Machinery gene
  H6S61_RS13490 (H6S61_13490) rrtA 2757003..2757563 (-) 561 WP_339327429.1 rhombosortase -
  H6S61_RS13495 (H6S61_13495) - 2757567..2758175 (+) 609 WP_017420945.1 DTW domain-containing protein -
  H6S61_RS13500 (H6S61_13500) - 2758197..2759528 (-) 1332 WP_165387805.1 anti-phage deoxyguanosine triphosphatase -
  H6S61_RS13505 (H6S61_13505) yfbR 2759534..2760118 (-) 585 WP_017420943.1 5'-deoxynucleotidase -
  H6S61_RS13510 (H6S61_13510) - 2760199..2761413 (-) 1215 WP_017420942.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 10917.84 Da        Isoelectric Point: 9.9770

>NTDB_id=473563 H6S61_RS13485 WP_185890779.1 2756654..2756956(+) (comEA) [Vibrio vulnificus strain 2497-87]
MKQVITLLAMLMAFSFPSVSFADSATKAADKYEGIEISVNINTATAEEIAMMLKGVGIKKAQQIVDFREAHGPFKTVDEL
VKVKGIGKSTIEKNQSRIKL

Nucleotide


Download         Length: 303 bp        

>NTDB_id=473563 H6S61_RS13485 WP_185890779.1 2756654..2756956(+) (comEA) [Vibrio vulnificus strain 2497-87]
ATGAAACAGGTAATTACCCTTTTAGCCATGCTAATGGCATTCTCTTTTCCTTCCGTTTCTTTTGCGGACTCTGCAACGAA
AGCGGCCGATAAATATGAAGGCATTGAGATTTCCGTCAACATCAACACGGCAACAGCAGAAGAAATTGCCATGATGTTAA
AAGGCGTTGGTATTAAAAAAGCTCAGCAAATTGTTGACTTTAGAGAAGCTCATGGACCGTTTAAAACGGTTGATGAGTTA
GTTAAAGTGAAAGGTATCGGTAAGTCAACGATTGAGAAAAATCAGTCACGGATTAAGTTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(38-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

60

100

0.6
  comEA Vibrio campbellii strain DS40M4

56

100

0.56
  comEA Vibrio cholerae C6706

51.02

98

0.5
  comEA Vibrio cholerae strain A1552

51.02

98

0.5