Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   H4B47_RS07365 Genome accession   NZ_CP060029
Coordinates   1510821..1511303 (+) Length   160 a.a.
NCBI ID   WP_001046416.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AbCTX1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1505821..1516303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4B47_RS07355 (H4B47_07375) pilX 1506124..1506942 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  H4B47_RS07360 (H4B47_07380) pilY1 1506954..1510808 (+) 3855 WP_024432273.1 PilC/PilY family type IV pilus protein Machinery gene
  H4B47_RS07365 (H4B47_07385) pilY2 1510821..1511303 (+) 483 WP_001046416.1 type IV pilin protein Machinery gene
  H4B47_RS07370 (H4B47_07390) pilE 1511300..1511725 (+) 426 WP_000788339.1 type IV pilin protein Machinery gene
  H4B47_RS07375 (H4B47_07395) rpsP 1511872..1512123 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  H4B47_RS07380 (H4B47_07400) rimM 1512143..1512691 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  H4B47_RS07385 (H4B47_07405) trmD 1512737..1513477 (+) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  H4B47_RS07390 (H4B47_07410) rplS 1513685..1514053 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  H4B47_RS07395 (H4B47_07415) - 1514106..1515047 (-) 942 WP_086223958.1 triacylglycerol lipase -
  H4B47_RS07400 (H4B47_07420) - 1515163..1516197 (-) 1035 WP_024432274.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17533.80 Da        Isoelectric Point: 8.4817

>NTDB_id=473456 H4B47_RS07365 WP_001046416.1 1510821..1511303(+) (pilY2) [Acinetobacter baumannii strain AbCTX1]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCETNSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=473456 H4B47_RS07365 WP_001046416.1 1510821..1511303(+) (pilY2) [Acinetobacter baumannii strain AbCTX1]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCCGTTGATAATGATTGTGGTGGTACGACTACTTGTAATACATGTGAAACGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

95

100

0.95
  comE Acinetobacter baylyi ADP1

41.279

100

0.444