Detailed information NTG0473457

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I6K14_RS04955
• Genome accession: NZ_CP070170
• Coordinates: 1057120..1058112 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain FDAARGOS_1284
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1052120..1063112

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6K14_RS04925 (I6K14_04925)	ispD	1052181..1052891 (+)	711	WP_001539454.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
I6K14_RS04930 (I6K14_04930)	ispF	1052891..1053370 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
I6K14_RS04935 (I6K14_04935)	truD	1053367..1054416 (+)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
I6K14_RS04940 (I6K14_04940)	surE	1054397..1055158 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
I6K14_RS04945 (I6K14_04945)	pcm	1055152..1055778 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
I6K14_RS04950 (I6K14_04950)	nlpD	1055963..1057057 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
I6K14_RS04955 (I6K14_04955)	rpoS	1057120..1058112 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
I6K14_RS04960 (I6K14_04960)	-	1058290..1058841 (-)	552	WP_204653577.1	flavodoxin family protein	-
I6K14_RS04965 (I6K14_04965)	-	1059075..1060109 (+)	1035	WP_353051800.1	MBL fold metallo-hydrolase	-
I6K14_RS04970 (I6K14_04970)	ygbN	1060252..1061616 (-)	1365	WP_021531526.1	GntP family transporter	-
I6K14_RS04975 (I6K14_04975)	ygbM	1061705..1062481 (-)	777	WP_001136911.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=473457 I6K14_RS04955 WP_000081550.1 1057120..1058112(+) (rpoS) [Escherichia coli strain FDAARGOS_1284]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=473457 I6K14_RS04955 WP_000081550.1 1057120..1058112(+) (rpoS) [Escherichia coli strain FDAARGOS_1284]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715