Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   HNQ25_RS19420 Genome accession   NZ_CP060009
Coordinates   4116473..4117813 (+) Length   446 a.a.
NCBI ID   WP_179545692.1    Uniprot ID   -
Organism   Pseudomonas sediminis strain B10D7D     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4111473..4122813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HNQ25_RS19395 (HNQ25_19395) pgeF 4111626..4112357 (-) 732 WP_179545690.1 peptidoglycan editing factor PgeF -
  HNQ25_RS19400 (HNQ25_19400) rluD 4112354..4113328 (-) 975 WP_106732813.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  HNQ25_RS19405 (HNQ25_19405) - 4113467..4114459 (+) 993 WP_179545691.1 outer membrane protein assembly factor BamD -
  HNQ25_RS19410 (HNQ25_19410) - 4114652..4114888 (+) 237 WP_099522406.1 PP0621 family protein -
  HNQ25_RS19415 (HNQ25_19415) pilS 4114878..4116470 (+) 1593 WP_179546259.1 ATP-binding protein Regulator
  HNQ25_RS19420 (HNQ25_19420) pilR 4116473..4117813 (+) 1341 WP_179545692.1 sigma-54 dependent transcriptional regulator Regulator
  HNQ25_RS19425 (HNQ25_19425) thiO 4117915..4119009 (-) 1095 WP_244968158.1 glycine oxidase ThiO -
  HNQ25_RS19430 (HNQ25_19430) - 4119122..4119646 (+) 525 WP_179545694.1 GspH/FimT family pseudopilin -
  HNQ25_RS19435 (HNQ25_19435) - 4119744..4120220 (+) 477 WP_179545695.1 GspH/FimT family pseudopilin -
  HNQ25_RS19440 (HNQ25_19440) pilV 4120217..4120678 (+) 462 WP_106732807.1 type IV pilus modification protein PilV -
  HNQ25_RS19445 (HNQ25_19445) - 4120675..4121667 (+) 993 WP_179545696.1 PilW family protein -
  HNQ25_RS19450 (HNQ25_19450) - 4121664..4122137 (+) 474 WP_179545697.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49790.12 Da        Isoelectric Point: 5.6116

>NTDB_id=473279 HNQ25_RS19420 WP_179545692.1 4116473..4117813(+) (pilR) [Pseudomonas sediminis strain B10D7D]
MNRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAREPFDLCLTDMRLPDGTGLDLVQHIQQRHPQVPVAM
ITAYGSLDTAINSLKAGAFDFLTKPVDLGRLRELVATALRIRAPEGEETPVDSRLLGDSPPMKSLRKQILKLSRSQAPVY
ISGESGSGKELVARLIHEQGPRIEQPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQEVVVDVRILCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIAQLTDVM
LARLADGTGLAAAKLHPDALEKLKSYRFPGNVRELENMLERAYTLCEDDQITPGDLRLADASGPSNEGGEASLAQIDNLE
DYLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=473279 HNQ25_RS19420 WP_179545692.1 4116473..4117813(+) (pilR) [Pseudomonas sediminis strain B10D7D]
ATGAACCGTCAGAGAGCCCTGATCGTCGACGACGAGCCCGATATCCGCGAGCTGCTGGAAATCACCCTCGGACGTATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAAGCACGCGAATGGCTGGCGCGCGAGCCGTTTGACCTGTGCTTGACCG
ACATGCGCCTGCCCGACGGCACCGGCCTGGATCTGGTGCAACACATCCAGCAGCGTCATCCACAGGTGCCGGTGGCGATG
ATCACCGCTTACGGCAGTCTGGATACCGCGATCAACTCGCTCAAGGCTGGCGCCTTCGACTTCCTTACCAAACCGGTGGA
CCTTGGGCGTCTGCGCGAACTGGTGGCCACCGCCCTGCGCATTCGTGCGCCCGAAGGTGAGGAAACGCCAGTCGACAGTC
GCCTGCTCGGCGACTCGCCACCGATGAAGTCGCTGCGCAAGCAGATCCTGAAGCTTTCGCGCAGCCAGGCGCCGGTTTAT
ATCAGTGGCGAATCGGGCAGTGGCAAGGAGCTGGTTGCCCGCCTGATCCATGAGCAGGGCCCACGCATCGAACAGCCGTT
CGTGCCGGTCAACTGCGGCGCGATACCCTCGGAGTTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACCG
GCGCAATCGAAGACAAACAGGGCCTGTTCCAGGCGGCCAATGGCGGCACGCTGTTCCTCGATGAAGTTGCCGACCTGCCG
CTGCCAATGCAGGTGAAACTGCTGCGTGCGATTCAGGAGAAGGCCGTGCGCGCCGTCGGCGGCCAGCAGGAAGTGGTGGT
CGATGTGCGCATCCTCTGCGCTACCCACAAGGACCTTGCCGCCGAAGTCGCCGCCGGCCGCTTCCGTCAGGACCTCTACT
ACCGCCTCAACGTCATCGAGTTGCGCGTACCACCGCTGCGTGAACGTCGCGAAGATATCGCCCAGCTGACTGACGTGATG
CTCGCGCGCCTGGCCGATGGTACCGGTCTGGCCGCCGCCAAACTGCACCCCGACGCACTGGAAAAGCTGAAGAGCTATCG
TTTCCCTGGCAACGTGCGCGAGCTGGAAAACATGCTCGAACGCGCCTACACCCTCTGCGAAGACGATCAGATCACACCCG
GCGACCTGCGCCTGGCAGATGCCAGTGGCCCCAGCAACGAAGGCGGCGAAGCCAGCCTGGCGCAGATCGACAACCTTGAG
GACTACCTCGAGGACATCGAACGCAAGCTGATCATGCAGGCCCTGGAGGAAACCCGCTGGAACCGCACAGCGGCGGCGCA
GCGCCTGGGCCTGACCTTCCGCTCGATGCGCTATCGACTGAAGAAGCTGGGTATCGACTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Response regulator receiver domain (Response_reg)

(7-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

89.013

100

0.89
  pilR Acinetobacter baumannii strain A118

49.13

100

0.507
  luxO Vibrio cholerae strain A1552

37.892

100

0.379